BO19814.complete Sequence
2389 bp assembled on 2010-10-20
GenBank Submission: KX794378
> BO19814.complete
GAAGTTATCAGTCGACATGCAGCAGGCCCCGCAGCAGCAGCAGCATCCCC
ATCCGCCCAGCAGCAGCTACTACACGCAAACCGAAAGCGAGCTGCTGCAG
ATTGAGGCGGGCGGCACGGGCCTGACCTTCGCCTCCCACTCGCAACGTCC
CGAATCGGCGATCAGTCAGGTGGCATCCACCGCCCACCTGGACGTGCCCT
CGGCCGCCTCCAGCGGCAGCGGGGGCAGTGCAGTCAGTGGGGGAAGCGGC
GGAGCTCCGGAATCCGCGGGTCGATTTGTGTCCCCGCTGCAGCGCCGCCA
CTGCCAGCCGCCCAGCCACCTGCCGCTGAACTCGGTGGCCTCCCCGCTCC
GCACCGCCAGCTACAAGTCGGCGGCGGCGGTCGCTGGTCATGGCTTCCAC
CACAGCCATCACCAGCAGCTGGACTTCCAGCGGAACTCGCAGTCGGACGA
CGACAGCGGCTGTGCCCTCGAGGAGTACACTTGGGTGCCGCCGGGTCTGC
GGCCCGATCAGGTCCGTTTGTACTTCAGTCAACTGCCAGACGACAAAGTG
CCCTACGTCAACAGTCCCGGCGAAAAGTATCGTGTCAAGCAGTTGCTGCA
CCAGCTGCCGCCGCAAGATAACGAAGTGCGCTACTGCCACTCGCTGAGCG
ACGAGGAGCGCAAGGAGCTGCGCATCTTCTCGGCCCAAAGGAAGCGGGAG
GCCCTCGGACGAGGGGCGGTCCGTCTGCTGTCCGACGAGCGGCCCTGCAA
GGGGTGCGAGGAGCCTTTGTCCGGCGGTGACATCGTGGTTTTCGCCCAGC
GCCTGGGCGCCCAGTTGTGTTGGCATCCGGGCTGCTTTGTGTGCAGCGTC
TGCAAGGAGCTCCTGGTGGACCTCATCTACTTCCAGCGGGACGGGAACCT
CTACTGCGGTCGGCACCATGCCGAAACCCAGAAGCCACGCTGCTCCGCCT
GCGATGAGATCATCTTCTCGGACGAGTGCACGGAGGCGGAGGGCAGAACG
TGGCACATGAAGCACTTCGCCTGCCAGGAGTGCGAGCACCAGCTGGGCGG
GCAGCGGTACATCATGCGGGAGGGCAAACCGTACTGTCTGGCCTGCTTCG
ACACAATGTTCGCCGAGTACTGCGACTACTGCGGGGAGGTAATCGGCGTG
GACCAGGGCCAGATGAGCCACGACGGGCAGCACTGGCATGCGACGGACCA
GTGCTTCAGCTGCTGCACCTGCCGCTGTTCGCTGCTGGGAAGGCCCTTCC
TGCCCAGAAGGGGCACCATCTACTGCTCGATCGCCTGTAGCAAAGGTGAG
CCGCCCACGCCGTCAGACACGAGTTCGGGTCCCCAGCTAAGGCCGACTCA
CCGAGCTTCCACCTCCAGCCAAATAGCTAAATCGCCGCGTAGAGGTGGAG
AGCGGGAGCGGGATCCGGGACGGAAGGCCCACCACGGTCACCCGAAGGCT
ACGGGCAGTGCAGGCGATCTGCTTGAGCGGCAGGAAAGGCAGCGCATGGA
GGCCGCGGGAGTGGCGGACCTACTGCTCGGAGGAGGAGTACCGGGCATGC
CTCGCCCAGCCCATCCACCGCCCATCGACCTAACCGAGTTGGGGATCAGC
CTGGACAACATTTGTGCCGGCGACAAGTCCATCTTCGGGGACACCCAGAC
CCTGACCAACTCCATGCCGGACATGCTGCTATCCAAGGCTGACGACTCGC
ACAGTTACCAGAGCATCGACAAAATCAACCTGAACTCGCCCAGCAACTCT
GATCTGACGCAGAGCACCCAGGAACTGGCCAACGAGCTGGAGCTGGACAA
CGAGCCGGTGCGGGAGCTGCCCCACGATGGCTACGAACAGCTCTTCGCTA
ACAATCGCAACCAGGAGCACCCGGCCGAACAATATGACGACGAGCAGCTG
GACAACCGACCGATGAAGGAGGTGCGCTTTCACAGCGTCCAGGACACTAT
GTCGCGCTCAAAGAGCTACACGGATAACTCCAATGCCCGGCGGCGGAGGA
GGCGTCGCAACCAGTCGCGCAGCTCCTCGGAGATGCAGATCAACCAAACG
AACCTCCGCCTGCACAACGCACAAACGCAGGTGGGAACGACTCCCCTCAA
TCTGCTAAACAATCTGGACAACTGCGACGTGGCCAGCATCTGCTCCACCT
GCTCATCCAGCTCCTCGAGCGACATGGACGACTACGTATACCGCCTGCCT
GCGCGGAAACACTACGGCGGAGTGAGAGTGGCCTATGTGCCCAACGATGC
GTTGGCCTATGAGCGCAAGAAGAAGATGGCCCAGGACTCGTCCCTGGCCC
CCGGGGCAGGCAATGCATCCGTGGGCGGGGCACCGGCGATCATGCACGAG
AGCAAGAACTGCACGATTTCCGCAAGCTTTCTAGACCAT
BO19814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| esn-RC | 3405 | CG43722-PC | 1046..3402 | 15..2371 | 11770 | 100 | Plus |
| esn-RD | 2556 | CG43722-PD | 1..2355 | 17..2371 | 11760 | 100 | Plus |
| esn-RA | 2358 | CG43722-PA | 1..2355 | 17..2371 | 11760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| esn-RD | 3982 | CG43722-RD | 582..2938 | 15..2371 | 11770 | 100 | Plus |
| esn-RC | 4708 | CG43722-RC | 1308..3664 | 15..2371 | 11770 | 100 | Plus |
| esn-RA | 3982 | CG43722-RA | 582..2938 | 15..2371 | 11770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7125410..7126824 | 957..2371 | 7060 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7118479..7118977 | 15..513 | 2495 | 100 | Plus |
| 2R | 25286936 | 2R | 7221014..7221362 | 971..1319 | 1085 | 87.4 | Plus |
| 2R | 25286936 | 2R | 7124987..7125191 | 754..958 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 7120524..7120652 | 626..754 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 7119803..7119922 | 509..628 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 7220740..7220877 | 821..958 | 300 | 81.2 | Plus |
| 2R | 25286936 | 2R | 7209477..7209570 | 420..513 | 275 | 86.2 | Plus |
| 2R | 25286936 | 2R | 7219052..7219171 | 509..628 | 225 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:12:24 has no hits.
BO19814.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:54 Download gff for
BO19814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esn-RA | 584..2938 | 17..2373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:49 Download gff for
BO19814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esn-RA | 584..2938 | 17..2373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:33 Download gff for
BO19814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| esn-RA | 584..2938 | 17..2373 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:33 Download gff for
BO19814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7120524..7120652 | 626..754 | 100 | -> | Plus |
| 2R | 7124988..7125191 | 755..958 | 100 | -> | Plus |
| 2R | 7125412..7126824 | 959..2373 | 99 | | Plus |
| 2R | 7118481..7118975 | 17..511 | 100 | -> | Plus |
| 2R | 7119806..7119919 | 512..625 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:49 Download gff for
BO19814.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3005986..3006480 | 17..511 | 100 | -> | Plus |
| arm_2R | 3007311..3007424 | 512..625 | 100 | -> | Plus |
| arm_2R | 3008029..3008157 | 626..754 | 100 | -> | Plus |
| arm_2R | 3012493..3012696 | 755..958 | 100 | -> | Plus |
| arm_2R | 3012917..3014329 | 959..2373 | 99 | | Plus |
BO19814.pep Sequence
Translation from 16 to 2389
> BO19814.pep
MQQAPQQQQHPHPPSSSYYTQTESELLQIEAGGTGLTFASHSQRPESAIS
QVASTAHLDVPSAASSGSGGSAVSGGSGGAPESAGRFVSPLQRRHCQPPS
HLPLNSVASPLRTASYKSAAAVAGHGFHHSHHQQLDFQRNSQSDDDSGCA
LEEYTWVPPGLRPDQVRLYFSQLPDDKVPYVNSPGEKYRVKQLLHQLPPQ
DNEVRYCHSLSDEERKELRIFSAQRKREALGRGAVRLLSDERPCKGCEEP
LSGGDIVVFAQRLGAQLCWHPGCFVCSVCKELLVDLIYFQRDGNLYCGRH
HAETQKPRCSACDEIIFSDECTEAEGRTWHMKHFACQECEHQLGGQRYIM
REGKPYCLACFDTMFAEYCDYCGEVIGVDQGQMSHDGQHWHATDQCFSCC
TCRCSLLGRPFLPRRGTIYCSIACSKGEPPTPSDTSSGPQLRPTHRASTS
SQIAKSPRRGGERERDPGRKAHHGHPKATGSAGDLLERQERQRMEAAGVA
DLLLGGGVPGMPRPAHPPPIDLTELGISLDNICAGDKSIFGDTQTLTNSM
PDMLLSKADDSHSYQSIDKINLNSPSNSDLTQSTQELANELELDNEPVRE
LPHDGYEQLFANNRNQEHPAEQYDDEQLDNRPMKEVRFHSVQDTMSRSKS
YTDNSNARRRRRRRNQSRSSSEMQINQTNLRLHNAQTQVGTTPLNLLNNL
DNCDVASICSTCSSSSSSDMDDYVYRLPARKHYGGVRVAYVPNDALAYER
KKKMAQDSSLAPGAGNASVGGAPAIMHESKNCTISASFLDH
BO19814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| esn-PD | 851 | CG43722-PD | 1..785 | 1..785 | 4224 | 100 | Plus |
| esn-PC | 1134 | CG43722-PC | 350..1134 | 1..785 | 4224 | 100 | Plus |
| esn-PA | 785 | CG43722-PA | 1..785 | 1..785 | 4224 | 100 | Plus |
| esn-PB | 785 | CG43722-PB | 1..785 | 1..785 | 4224 | 100 | Plus |
| pk-PA | 963 | CG11084-PA | 109..546 | 63..498 | 1470 | 63.4 | Plus |
