BO19820.complete Sequence
499 bp assembled on 2009-05-13
GenBank Submission: KX798785
> BO19820.complete
GAAGTTATCAGTCGACATGGATAACATTGACGAAGACCTGACCCCCGAGC
AGATTGCCGTTCTGCAGAAGGCATTCAACAGCTTCGACCACCAGAAGACC
GGCAGTATCCCCACCGAAATGGTGGCCGATATCCTCCGTCTTATGGGTCA
GCCCTTCGACAGGCAGATCCTTGACGAGCTGATCGACGAGGTCGATGAGG
ACAAATCCGGTCGCCTGGAGTTCGAGGAGTTCGTCCAGCTGGCTGCCAAG
TTCATCGTAGAGGAGGATGATGAGGCCATGCAGAAGGAGCTGCGCGAGGC
TTTCCGTCTGTACGACAAGCAGGGCAATGGCTACATTCCCACCTCCTGCC
TGAAGGAGATCCTCAAGGAACTGGACGACCAGCTGACCGAACAGGAGCTC
GACATCATGATTGAGGAAATCGATTCCGACGGCTCTGGCACCGTTGATTT
TGATGAATTCATGGAGATGATGACTGGCGAGGCAAGCTTTCTAGACCAT
BO19820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC47D-RB | 468 | CG9073-PB | 1..465 | 17..481 | 2325 | 100 | Plus |
TpnC47D-RA | 468 | CG9073-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
TpnC73F-RC | 468 | CG7930-PC | 16..465 | 32..481 | 1515 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC47D-RB | 791 | CG9073-RB | 55..519 | 17..481 | 2325 | 100 | Plus |
TpnC47D-RA | 601 | CG9073-RA | 55..519 | 17..481 | 2325 | 100 | Plus |
TpnC73F-RC | 1059 | CG7930-RC | 210..659 | 32..481 | 1515 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11274580..11274831 | 455..204 | 1260 | 100 | Minus |
3L | 28110227 | 3L | 17047352..17047601 | 206..455 | 905 | 90.8 | Plus |
2R | 25286936 | 2R | 11274890..11275064 | 203..29 | 875 | 100 | Minus |
3L | 28110227 | 3L | 17046344..17046460 | 32..148 | 300 | 83.8 | Plus |
3L | 28110227 | 3L | 17046522..17046579 | 146..203 | 200 | 89.7 | Plus |
2L | 23513712 | 2L | 5218651..5218773 | 242..364 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:48 has no hits.
BO19820.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:46 Download gff for
BO19820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC47D-RA | 60..524 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:54 Download gff for
BO19820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC47D-RA | 55..519 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:04 Download gff for
BO19820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC47D-RA | 55..519 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:04 Download gff for
BO19820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11274580..11274831 | 204..455 | 100 | <- | Minus |
2R | 11274890..11275064 | 29..203 | 100 | <- | Minus |
2R | 11274115..11274142 | 456..483 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:54 Download gff for
BO19820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7162085..7162336 | 204..455 | 100 | <- | Minus |
arm_2R | 7162395..7162569 | 29..203 | 100 | <- | Minus |
arm_2R | 7161620..7161647 | 456..483 | 92 | <- | Minus |
BO19820.pep Sequence
Translation from 16 to 499
> BO19820.pep
MDNIDEDLTPEQIAVLQKAFNSFDHQKTGSIPTEMVADILRLMGQPFDRQ
ILDELIDEVDEDKSGRLEFEEFVQLAAKFIVEEDDEAMQKELREAFRLYD
KQGNGYIPTSCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFME
MMTGEASFLDH
BO19820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC47D-PB | 155 | CG9073-PB | 1..155 | 1..155 | 788 | 100 | Plus |
TpnC47D-PA | 155 | CG9073-PA | 1..155 | 1..155 | 788 | 100 | Plus |
TpnC73F-PC | 155 | CG7930-PC | 1..155 | 1..155 | 739 | 92.9 | Plus |
TpnC73F-PA | 155 | CG7930-PA | 1..155 | 1..155 | 739 | 92.9 | Plus |
TpnC41C-PB | 154 | CG2981-PB | 1..151 | 4..154 | 498 | 64.2 | Plus |