Clone BO19848 Report

Search the DGRC for BO19848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:198
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL30-RA
Protein status:BO19848.pep: Imported from assembly
Sequenced Size:574

Clone Sequence Records

BO19848.complete Sequence

574 bp assembled on 2009-05-13

GenBank Submission: KX794096

> BO19848.complete
GAAGTTATCAGTCGACATGAACCTGGGAAGGCTGCTGAATCCACTGAGGA
GCACCGCATGTTCGGTGCGCAGCTACGGAAAGCACAACAAGAAGTTCCTC
TACAAAAATGGCCAGAAATTTGAGGGTATCACCTACTATCCCAGGACTCC
CGATCACCAGGATCCACCCGTGGAGCCGGCGAAACTTTTCCGGGTGCAGC
GCATCAAGCCGCTAAAGGGCAATCCCTACTGGGAGAATCGAATCCTCAAA
GATCTGGGACTAGACGGAAAGCAGAGCGATTTTACTGTCGTCAAGAACAT
ACCGGAGAACAATGCCCGCCTGTGGAAGATCAAGCATCTAATTAAGGTTA
CGCCGGTCACGTTCCCCTACGGAGAGCCCACTGCCCAGGATGTCCGGCAT
ACGATACTCAAGGAGAACGGCGAGTGCCTGGTAACCAAGGACCTGGGACC
CATCGATACCCGCCTGGCGGCTCGCCAGGATTACGACGAGCAGCCCAAGC
GACTGGATACCGATCTGCTGCGCAAAGATGCCCGCCTCAAGTGGCTAAAT
CCCTGGGCAAGCTTTCTAGACCAT

BO19848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL30-RA 543 CG7038-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL30-RA 696 CG7038-RA 97..636 17..556 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4648172..4648586 142..556 2075 100 Plus
X 23542271 X 4647967..4648095 17..145 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:06:21 has no hits.

BO19848.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:27 Download gff for BO19848.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL30-RA 91..630 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:50 Download gff for BO19848.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL30-RA 97..636 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:54 Download gff for BO19848.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL30-RA 97..636 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:54 Download gff for BO19848.complete
Subject Subject Range Query Range Percent Splice Strand
X 4647967..4648094 17..144 100 -> Plus
X 4648175..4648586 145..558 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:50 Download gff for BO19848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4542000..4542127 17..144 100 -> Plus
arm_X 4542208..4542619 145..558 99   Plus

BO19848.pep Sequence

Translation from 16 to 574

> BO19848.pep
MNLGRLLNPLRSTACSVRSYGKHNKKFLYKNGQKFEGITYYPRTPDHQDP
PVEPAKLFRVQRIKPLKGNPYWENRILKDLGLDGKQSDFTVVKNIPENNA
RLWKIKHLIKVTPVTFPYGEPTAQDVRHTILKENGECLVTKDLGPIDTRL
AARQDYDEQPKRLDTDLLRKDARLKWLNPWASFLDH

BO19848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL30-PA 180 CG7038-PA 1..180 1..180 978 100 Plus