BO19860.complete Sequence
766 bp assembled on 2009-05-13
GenBank Submission: KX797702
> BO19860.complete
GAAGTTATCAGTCGACATGGACAAACTAAATGAAAATGCTCGACAGCGGA
AGCAGATCAAGCTGGGAGAGATCGACACGGGCCCCATTATAGTGGCCCTC
CTGCTAGGCTTCATTGCAGTGGCCATATTTGTGATCCTGCGAAGACGCTC
TGCTGGTCGCAAGGACTTTCTGCTTACTGGGCTCAGTGAATCCGGCAAAA
GTGCCATCTTCATGCAGCTGATCCACGGCAAATTCCCGGCCACTTTTACT
TCCATCAAGGAGAACGTGGGAGATTACCGGACGGGCAGCGCGTCTGCCAG
GTTAGTGGATATACCCGGACATTATAGGGTGCGCGACAAGTGCTTGGAGC
TATATAAACACCGTGCCAAGGGCATTGTCTTTGTGGTGGACTCGGTTACT
GCCCACAAGGATATCCGGGATGTGGCAGACTTTCTGTACACCATCCTATC
AGACAGTGCCACACAACCCTGCTCTGTGCTAGTCCTTTGCAACAAGCAGG
ATCAAACCACCGCCAAGAGTGCCCAGGTCATTAAAAGCTTATTGGAGTCG
GAACTGCACACAGTGCGCGACACCAGAAGCCGCAAACTTCAATCCGTGGG
CGACGAGGATGGCAGCAAATCCATCACATTGGGCAAGCCAGGCCGTGACT
TCGAATTCTCACACATCGCACAGAATATCCAGTTTGCGGAAGCCTCCGCC
AAGGACACTGAACTTGATCCCCTCACCGATTGGCTCGCTCGGTTGCTGGC
AAGCTTTCTAGACCAT
BO19860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SrpRbeta-RB | 735 | CG33162-PB | 1..732 | 17..748 | 3660 | 100 | Plus |
| SrpRbeta-RA | 735 | CG33162-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SrpRbeta-RB | 1135 | CG33162-RB | 79..814 | 13..748 | 3665 | 99.9 | Plus |
| SrpRbeta-RA | 984 | CG33162-RA | 79..814 | 13..748 | 3665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8719270..8719588 | 748..430 | 1595 | 100 | Minus |
| 3L | 28110227 | 3L | 8719646..8719953 | 429..122 | 1540 | 100 | Minus |
| 3L | 28110227 | 3L | 8720038..8720147 | 122..13 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:45:11 has no hits.
BO19860.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:36 Download gff for
BO19860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SrpRbeta-RA | 75..806 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:54 Download gff for
BO19860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SrpRbeta-RA | 83..814 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:55 Download gff for
BO19860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SrpRbeta-RA | 83..814 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:55 Download gff for
BO19860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8719267..8719588 | 430..750 | 99 | <- | Minus |
| 3L | 8719646..8719952 | 123..429 | 100 | <- | Minus |
| 3L | 8720038..8720143 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:54 Download gff for
BO19860.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8712367..8712688 | 430..750 | 99 | <- | Minus |
| arm_3L | 8712746..8713052 | 123..429 | 100 | <- | Minus |
| arm_3L | 8713138..8713243 | 17..122 | 100 | | Minus |
BO19860.pep Sequence
Translation from 16 to 766
> BO19860.pep
MDKLNENARQRKQIKLGEIDTGPIIVALLLGFIAVAIFVILRRRSAGRKD
FLLTGLSESGKSAIFMQLIHGKFPATFTSIKENVGDYRTGSASARLVDIP
GHYRVRDKCLELYKHRAKGIVFVVDSVTAHKDIRDVADFLYTILSDSATQ
PCSVLVLCNKQDQTTAKSAQVIKSLLESELHTVRDTRSRKLQSVGDEDGS
KSITLGKPGRDFEFSHIAQNIQFAEASAKDTELDPLTDWLARLLASFLDH
BO19860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SrpRbeta-PB | 244 | CG33162-PB | 1..244 | 1..244 | 1225 | 100 | Plus |
| SrpRbeta-PA | 244 | CG33162-PA | 1..244 | 1..244 | 1225 | 100 | Plus |
