BO19866.complete Sequence
2764 bp assembled on 2010-10-20
GenBank Submission: KX796920
> BO19866.complete
GAAGTTATCAGTCGACATGGTACGAAAAAAACGAGAAATCGTAATAAAGG
AAAATATTCAAGGACGAAGTTACCTTAAAAAAATATGTTGTTCGTATATA
ATACTGTCCATCCTCGTAATTTCTAATGCCTTGCCCCCAGTAATACGAGT
AGGTGCCATATTTACGGAAGATGAACGCGAAAGCAGTATTGAATCTGCAT
TTAAATACGCAATATACCGTATAAATAAGGAAAAGACTCTTCTTCCCAAT
ACACAATTGGTTTACGATATTGAGTATGTTCCCCGAGATGACTCGTTTCG
CACTACTAAAAAGGTTTGCAGTCAGTTGGAAGCAGGTGTTCAAGCAATTT
TTGGCCCAACAGATGCTCTTTTAGCTAGTCATGTACAATCCATATGCGAA
GCATATGATATACCCCATATTGAAGGTCGAATTGACCTCGAATATAATTC
TAAAGAATTTTCTATAAATTTATATCCGTCGCATACGCTCTTAACTCTAG
CATATAGAGATATAATGGTATATTTGAACTGGACGAAGGTGGCAATAATT
TATGAAGAAGATTATGGTCTATTTAATTTGATGCACTCATCAACTGAGAC
GAAAGCGGAAATGTATATAAGGCAAGCAAGTCCGGATTCCTATCGCCAAG
TTTTACGAGCGATACGTCAAAAGGAAATTTACAAAATAATAGTGGATACA
AATCCGTCCCATATAAAATCGTTTTTTAGATCCATTTTGCAACTACAAAT
GAATGACCATCGTTACCATTATATGTTTACAACATTCGACTTGGAGACAT
ATGATCTGGAAGATTTCAGATATAACAGCGTAAATATAACTGCATTTCGG
CTGGTAGATGTCGATAGCAAAAGATATCTCGAAGTAATTAATCAAATGCA
GAAATTACAACACAATGGATTGGACACTATAAATGGAAGTCCTTATATAC
AGACGGAGTCCGCATTAATGTTTGATTCGGTGTACGCGTTTGCGAATGGA
CTACACTTTCTAAATTTGGATAATCACCAAAATTTTTATATCAAAAACCT
ATCCTGCACCTCCGACCAAACCTGGAATGATGGAATTTCATTGTATAACC
AAATAAATGCAGCCATCACAGACGGACTGACTGGCACTGTCCAATTTGTG
GAAGGTCGGCGAAACATATTTAAGCTTGATATTCTTAAACTAAAGCAAGA
AAAAATACAAAAGGTTGGATATTGGCATCCCGACGACGGTGTTAACATTT
CGGATCCAACAGCTTTCTACGATTCAAATATCGCAAATATAACCTTGGTC
GTTATGACTAGAGAGGAGCGGCCGTATGTTATGGTTAAAGAAGACAAAAA
TCTAACTGGAAATTTGAGGTTTGAAGGATTTTGTATTGATCTTTTAAAAG
CAATCGCCACACAAGTTGGGTTTCAATATAAAATTGAATTAGTTCCCGAT
AATATGTACGGTGTTTACATACCAGAGACTAATTCATGGAATGGAATCGT
GCAGGAATTAATGGAAAGGCGTGCTGATCTTGCTGTAGCCTCAATGACAA
TTAATTATGCTCGGGAAAGTGTTATCGACTTTACCAAACCATTTATGAAC
TTGGGCATTGGCATATTATTCAAGGTGCCGACAAGTCAACCAACACGACT
GTTCTCCTTTATGAACCCTTTGGCAATCGAGATATGGCTTTATGTGCTAG
CTGCATACATATTAGTATCTTTCGCGCTCTTTGTAATGGCTCGATTTTCT
CCATATGAGTGGAAAAACCCCCATCCATGCTACAAGGAAACGGATATAGT
GGAAAATCAGTTTTCCATATCAAACAGTTTTTGGTTTATAACAGGAACAT
TCTTACGCCAAGGATCTGGACTTAATCCGAAGGCAACCTCGACGCGTATT
GTGGGCGGATGCTGGTTCTTTTTTTGCCTAATCATTATATCTTCATACAC
TGCCAACTTAGCTGCATTTCTAACAGTTGAACGGATGATTTCCCCCATTG
AAAGCGCTTCTGATTTGGCAGAGCAAACCGAAATATCATATGGAACTTTG
GAAGGTGGATCGACAATGACATTTTTTAGGGATTCAAAAATTGGTATATA
TCAAAAAATGTGGCGTTATATGGAAAACCGTAAAACAGCTGTATTTGTAA
AAACCTATGAAGACGGAATTAAACGAGTAATGGAAGGAAGCTATGCTTTT
TTGATGGAATCGACAATGCTGGACTATGCTGTTCAACGTGATTGTAATCT
GACCCAAATAGGAGGCCTTCTTGATTCTAAAGGTTATGGTATCGCAACAC
CCAAGGGCTCTCCATGGAGAGATAAAATATCACTTGCTATTTTAGAGCTT
CAAGAAAAGGGTATTATTCAAATATTATATGACAAATGGTGGAAAAATAC
AGGTGACGTTTGCAACAGAGATGATAAGAGCAAGGAGTCCAAAGCCAATG
CACTTGGAGTAGAAAATATTGGTGGCGTGTTTGTTGTTCTCCTTTGTGGA
CTTGCGCTTGCAGTTGTTGTAGCCATATTTGAGTTTTGCTGGAATTCTAG
AAAAAATTTAAATACTGAAAATCAATCTCTGTGTTCAGAAATGGCAGAGG
AACTTCGTTTTGCAATGCACTGCCATGGTTCAAAATCAAGACATAGACCG
CGAAAACGAAGTTGCCTTAATTGTTCGTCTGTACCAACATATGTTCCGAG
TAATGTGAGCACGTCAAATGTGGGCGTTTACTATAATTACTTTAATGCAA
GCTTTCTAGACCAT
BO19866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11155-RD | 2733 | CG11155-PD | 1..2730 | 17..2746 | 13650 | 100 | Plus |
| CG11155-RA | 2733 | CG11155-PA | 1..2730 | 17..2746 | 13650 | 100 | Plus |
| CG11155-RB | 2568 | CG11155-PB | 1..1866 | 17..1882 | 9330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11155-RD | 4984 | CG11155-RD | 149..2878 | 17..2746 | 13650 | 100 | Plus |
| CG11155-RA | 2979 | CG11155-RA | 149..2878 | 17..2746 | 13650 | 100 | Plus |
| CG11155-RB | 3644 | CG11155-RB | 149..2014 | 17..1882 | 9330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1127000..1127417 | 151..568 | 2090 | 100 | Plus |
| 4 | 1348131 | 4 | 1135088..1135486 | 2075..2473 | 1980 | 99.7 | Plus |
| 4 | 1348131 | 4 | 1135538..1135813 | 2471..2746 | 1380 | 100 | Plus |
| 4 | 1348131 | 4 | 1131699..1131959 | 1623..1883 | 1305 | 100 | Plus |
| 4 | 1348131 | 4 | 1131191..1131396 | 1314..1519 | 1030 | 100 | Plus |
| 4 | 1348131 | 4 | 1130383..1130587 | 1112..1316 | 1025 | 100 | Plus |
| 4 | 1348131 | 4 | 1133873..1134073 | 1881..2081 | 1005 | 100 | Plus |
| 4 | 1348131 | 4 | 1128488..1128655 | 566..733 | 840 | 100 | Plus |
| 4 | 1348131 | 4 | 1129566..1129730 | 788..952 | 825 | 100 | Plus |
| 4 | 1348131 | 4 | 1130023..1130184 | 951..1112 | 810 | 100 | Plus |
| 4 | 1348131 | 4 | 1126808..1126943 | 19..154 | 680 | 100 | Plus |
| 4 | 1348131 | 4 | 1131488..1131595 | 1519..1626 | 540 | 100 | Plus |
| 4 | 1348131 | 4 | 1129435..1129489 | 734..788 | 275 | 100 | Plus |
| 4 | 1348131 | 4 | 639089..639205 | 2397..2281 | 270 | 82.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:18:41 has no hits.
BO19866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:21 Download gff for
BO19866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 144..2873 | 17..2748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:40 Download gff for
BO19866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 149..2878 | 17..2748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:43 Download gff for
BO19866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11155-RA | 149..2878 | 17..2748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:43 Download gff for
BO19866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1130025..1130183 | 953..1111 | 100 | -> | Plus |
| 4 | 1135539..1135813 | 2472..2748 | 99 | | Plus |
| 4 | 1130383..1130586 | 1112..1315 | 100 | -> | Plus |
| 4 | 1129566..1129730 | 788..952 | 100 | -> | Plus |
| 4 | 1126807..1126941 | 17..152 | 99 | -> | Plus |
| 4 | 1127002..1127415 | 153..566 | 100 | -> | Plus |
| 4 | 1128489..1128655 | 567..733 | 100 | -> | Plus |
| 4 | 1129435..1129488 | 734..787 | 100 | -> | Plus |
| 4 | 1135094..1135484 | 2081..2471 | 100 | -> | Plus |
| 4 | 1131193..1131396 | 1316..1519 | 100 | -> | Plus |
| 4 | 1131489..1131593 | 1520..1624 | 100 | -> | Plus |
| 4 | 1131701..1131958 | 1625..1882 | 100 | -> | Plus |
| 4 | 1133875..1134072 | 1883..2080 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:40 Download gff for
BO19866.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1147433..1147567 | 17..152 | 99 | -> | Plus |
| arm_4 | 1147628..1148041 | 153..566 | 100 | -> | Plus |
| arm_4 | 1149115..1149281 | 567..733 | 100 | -> | Plus |
| arm_4 | 1150061..1150114 | 734..787 | 100 | -> | Plus |
| arm_4 | 1150192..1150356 | 788..952 | 100 | -> | Plus |
| arm_4 | 1150651..1150809 | 953..1111 | 100 | -> | Plus |
| arm_4 | 1151009..1151212 | 1112..1315 | 100 | -> | Plus |
| arm_4 | 1151819..1152022 | 1316..1519 | 100 | -> | Plus |
| arm_4 | 1152115..1152219 | 1520..1624 | 100 | -> | Plus |
| arm_4 | 1152327..1152584 | 1625..1882 | 100 | -> | Plus |
| arm_4 | 1154501..1154698 | 1883..2080 | 100 | -> | Plus |
| arm_4 | 1155720..1156110 | 2081..2471 | 100 | -> | Plus |
| arm_4 | 1156165..1156439 | 2472..2748 | 99 | | Plus |
BO19866.pep Sequence
Translation from 16 to 2764
> BO19866.pep
MVRKKREIVIKENIQGRSYLKKICCSYIILSILVISNALPPVIRVGAIFT
EDERESSIESAFKYAIYRINKEKTLLPNTQLVYDIEYVPRDDSFRTTKKV
CSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSKEFSI
NLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAEMY
IRQASPDSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRY
HYMFTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHN
GLDTINGSPYIQTESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSCTSD
QTWNDGISLYNQINAAITDGLTGTVQFVEGRRNIFKLDILKLKQEKIQKV
GYWHPDDGVNISDPTAFYDSNIANITLVVMTREERPYVMVKEDKNLTGNL
RFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELME
RRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMN
PLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFS
ISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAA
FLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWR
YMENRKTAVFVKTYEDGIKRVMEGSYAFLMESTMLDYAVQRDCNLTQIGG
LLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCN
RDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNT
ENQSLCSEMAEELRFAMHCHGSKSRHRPRKRSCLNCSSVPTYVPSNVSTS
NVGVYYNYFNASFLDH
BO19866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11155-PD | 910 | CG11155-PD | 1..910 | 1..910 | 4757 | 100 | Plus |
| CG11155-PA | 910 | CG11155-PA | 1..910 | 1..910 | 4757 | 100 | Plus |
| CG11155-PB | 855 | CG11155-PB | 1..622 | 1..622 | 3239 | 100 | Plus |
| CG9935-PB | 899 | CG9935-PB | 3..889 | 23..887 | 2472 | 53.7 | Plus |
| CG9935-PD | 898 | CG9935-PD | 3..888 | 23..887 | 2459 | 53.7 | Plus |
| CG11155-PB | 855 | CG11155-PB | 758..855 | 595..692 | 427 | 81.6 | Plus |
