Clone BO19871 Report

Search the DGRC for BO19871

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:198
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ee-RA
Protein status:BO19871.pep: Imported from assembly
Sequenced Size:718

Clone Sequence Records

BO19871.complete Sequence

718 bp assembled on 2009-05-13

GenBank Submission: KX797308

> BO19871.complete
GAAGTTATCAGTCGACATGGACTGCGGCACATCTATGGTCAAATACATCC
TCTTCATATTCAACACCATTGTGTCGGTTATCGGCATCTTGGGCATTGTT
TATGGCGTGCTGATTCTGAAGAGCATCGGTGTAGTTGAAGTTAATGGACA
GGTGGGCTTCCCGATACAGGCTCTTATGCCGATCATTCTTATCAGCTTGG
GCTCGATTGTGGTCTTCATTTCATTCCTGGGATGCTGCGGTGCCATTCGC
GAATCCGTCTGCATGACCATGAGCTATGCCACCTTCTTGCTGATCCTGCT
GATCCTGCAGCTGACGTTCGTTGTTCTGCTGTTTACCCACAGGGAAGAGT
TTGAGAACGCAATGGGAAACGTTATCGAGAATGCATGGAATTCTGAACAT
ACTTATAAGGGAGGTGTCTTCGACACCATTCAGAAATCGTTGCACTGCTG
CGGATCAAGCTCTGCTCTGGACTACATCGGCAAGGGAGACTTGGTGCCCC
CAAGTTGTTGCAGCGGTTCGTGCCTGATCCCGACTAACTACTACCCGGGA
TGCCGTGGAAAGTTCGTCGAATTAATGACCACTGGATCTGATAACGCTAA
ATATGTGGGCATCGGCCTCATCGGAATAGAGCTGATCGGCTTTATCTTTG
CCTGCTGCCTGGCCAACAACGTGCGTAACTACAAGCGCCGGAACGCCTAC
GCAAGCTTTCTAGACCAT

BO19871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ee-RB 687 CG10106-PB 1..684 17..700 3420 100 Plus
Tsp42Ee-RA 687 CG10106-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ee-RB 1381 CG10106-RB 94..777 17..700 3420 100 Plus
Tsp42Ee-RA 1394 CG10106-RA 107..790 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7017012..7017375 76..439 1820 100 Plus
2R 25286936 2R 7017434..7017630 439..635 970 99.5 Plus
2R 25286936 2R 7017688..7017758 630..700 355 100 Plus
2R 25286936 2R 7013057..7013118 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:04:23 has no hits.

BO19871.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:33 Download gff for BO19871.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ee-RA 105..788 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:07 Download gff for BO19871.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ee-RA 107..790 17..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:50 Download gff for BO19871.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ee-RA 107..790 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:50 Download gff for BO19871.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7013057..7013116 17..76 100 -> Plus
2R 7017013..7017375 77..439 100 -> Plus
2R 7017435..7017626 440..631 100 -> Plus
2R 7017690..7017758 632..702 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:07 Download gff for BO19871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2900562..2900621 17..76 100 -> Plus
arm_2R 2904518..2904880 77..439 100 -> Plus
arm_2R 2904940..2905131 440..631 100 -> Plus
arm_2R 2905195..2905263 632..702 97   Plus

BO19871.pep Sequence

Translation from 16 to 718

> BO19871.pep
MDCGTSMVKYILFIFNTIVSVIGILGIVYGVLILKSIGVVEVNGQVGFPI
QALMPIILISLGSIVVFISFLGCCGAIRESVCMTMSYATFLLILLILQLT
FVVLLFTHREEFENAMGNVIENAWNSEHTYKGGVFDTIQKSLHCCGSSSA
LDYIGKGDLVPPSCCSGSCLIPTNYYPGCRGKFVELMTTGSDNAKYVGIG
LIGIELIGFIFACCLANNVRNYKRRNAYASFLDH

BO19871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ee-PB 228 CG10106-PB 1..228 1..228 1192 100 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..228 1192 100 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..228 519 45.2 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..228 519 45.2 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..228 519 45.2 Plus