BO19871.complete Sequence
718 bp assembled on 2009-05-13
GenBank Submission: KX797308
> BO19871.complete
GAAGTTATCAGTCGACATGGACTGCGGCACATCTATGGTCAAATACATCC
TCTTCATATTCAACACCATTGTGTCGGTTATCGGCATCTTGGGCATTGTT
TATGGCGTGCTGATTCTGAAGAGCATCGGTGTAGTTGAAGTTAATGGACA
GGTGGGCTTCCCGATACAGGCTCTTATGCCGATCATTCTTATCAGCTTGG
GCTCGATTGTGGTCTTCATTTCATTCCTGGGATGCTGCGGTGCCATTCGC
GAATCCGTCTGCATGACCATGAGCTATGCCACCTTCTTGCTGATCCTGCT
GATCCTGCAGCTGACGTTCGTTGTTCTGCTGTTTACCCACAGGGAAGAGT
TTGAGAACGCAATGGGAAACGTTATCGAGAATGCATGGAATTCTGAACAT
ACTTATAAGGGAGGTGTCTTCGACACCATTCAGAAATCGTTGCACTGCTG
CGGATCAAGCTCTGCTCTGGACTACATCGGCAAGGGAGACTTGGTGCCCC
CAAGTTGTTGCAGCGGTTCGTGCCTGATCCCGACTAACTACTACCCGGGA
TGCCGTGGAAAGTTCGTCGAATTAATGACCACTGGATCTGATAACGCTAA
ATATGTGGGCATCGGCCTCATCGGAATAGAGCTGATCGGCTTTATCTTTG
CCTGCTGCCTGGCCAACAACGTGCGTAACTACAAGCGCCGGAACGCCTAC
GCAAGCTTTCTAGACCAT
BO19871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ee-RB | 687 | CG10106-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
Tsp42Ee-RA | 687 | CG10106-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ee-RB | 1381 | CG10106-RB | 94..777 | 17..700 | 3420 | 100 | Plus |
Tsp42Ee-RA | 1394 | CG10106-RA | 107..790 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7017012..7017375 | 76..439 | 1820 | 100 | Plus |
2R | 25286936 | 2R | 7017434..7017630 | 439..635 | 970 | 99.5 | Plus |
2R | 25286936 | 2R | 7017688..7017758 | 630..700 | 355 | 100 | Plus |
2R | 25286936 | 2R | 7013057..7013118 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:04:23 has no hits.
BO19871.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:33 Download gff for
BO19871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ee-RA | 105..788 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:07 Download gff for
BO19871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ee-RA | 107..790 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:50 Download gff for
BO19871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ee-RA | 107..790 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:50 Download gff for
BO19871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7013057..7013116 | 17..76 | 100 | -> | Plus |
2R | 7017013..7017375 | 77..439 | 100 | -> | Plus |
2R | 7017435..7017626 | 440..631 | 100 | -> | Plus |
2R | 7017690..7017758 | 632..702 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:07 Download gff for
BO19871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2900562..2900621 | 17..76 | 100 | -> | Plus |
arm_2R | 2904518..2904880 | 77..439 | 100 | -> | Plus |
arm_2R | 2904940..2905131 | 440..631 | 100 | -> | Plus |
arm_2R | 2905195..2905263 | 632..702 | 97 | | Plus |
BO19871.pep Sequence
Translation from 16 to 718
> BO19871.pep
MDCGTSMVKYILFIFNTIVSVIGILGIVYGVLILKSIGVVEVNGQVGFPI
QALMPIILISLGSIVVFISFLGCCGAIRESVCMTMSYATFLLILLILQLT
FVVLLFTHREEFENAMGNVIENAWNSEHTYKGGVFDTIQKSLHCCGSSSA
LDYIGKGDLVPPSCCSGSCLIPTNYYPGCRGKFVELMTTGSDNAKYVGIG
LIGIELIGFIFACCLANNVRNYKRRNAYASFLDH
BO19871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ee-PB | 228 | CG10106-PB | 1..228 | 1..228 | 1192 | 100 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 1..228 | 1..228 | 1192 | 100 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..228 | 519 | 45.2 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..228 | 519 | 45.2 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..228 | 519 | 45.2 | Plus |