Clone BO19872 Report

Search the DGRC for BO19872

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:198
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG15161-RA
Protein status:BO19872.pep: Imported from assembly
Sequenced Size:1282

Clone Sequence Records

BO19872.complete Sequence

1282 bp assembled on 2009-05-13

GenBank Submission: KX798896

> BO19872.complete
GAAGTTATCAGTCGACATGAACTTCTACGACGAGGAGATCACAATCGGCG
GACCCGACTCCAAGCACCTGAGCAGTGTTCAAATGGAGCCCCGAAATGGA
GGAACAGGCGGTGGCAGAGGTGGTGCTGGCGGTGGTGGACCAGGAGCAGT
GGGCGGAGAAGGAGCTGTACGAAGAGCAGCCGCAGGCAGGCACCGTCGAA
TGTTCCAAAACAACTCTACTGATGACGATGGTCTGCTGCAGGACATCATT
GATCACGATGACGAGGCGGAGGACAGCGAGGATGACGATGACAGCGAGAT
GCAGCTGCCCCAGGGCATGACCATGGGCGTGGGAATGACGGGTCTGGTGC
CCGGGCCGAACATGCAAAAGCGGCCGGGAAGCAACCGAAGTTCCAAGCAA
GTACCGGATGACACCCTGAGCTCGGGCAGCGAGGAGGCCGCAATGGGTGG
CAGAATGGGATCCGGAGGAGCAAGAGGCGGAGCCAAGCTACCACATCAAA
AGCTAACGCTTCCCATGAGGGGAAGTGCTAGTGGAGCAGGAAGATCTAAG
CGGCAGGATGATCAATCCTTTATTATGAGTGCCGACAAATGGGAGGATCT
GTCCGTGCCCGGAGAACTCAAGGAACTCTTTCCCTACATCGTCAAATACA
CCCCGCAAACGATCGATACTCCGTTTCACCTGCAACCTTTCATCCCCGAG
TTTGTGCCCGCTGTGGGTGATGTGGATGCCCTTCTGAAAGTCCAGGCTCC
GCCTCTTTTGCAGCCCCAACGCCAGAAGGATCTGAACGATCACTTGGAGA
AATTGGGCTTATGGTTGCTCGATGAGCCCTCTGGCGCTCAAAGTGAGCCC
AGTCTGCTGAATATGAAACTTCGGTCGGTACTGAGTGGCAGCATGGGGCG
AAATCCGCGTCACGCCTCCTCCGCATCACTGGTTCCCACCGCCCGATCGG
GCAAGGATATAGAGAAGTGGATCACTGAGGTGGAACAAGTGCATATGACT
CAGTCAATGTACGATGTCCAGCCCAGAAAGGACATAGATGCCCTCCTGGA
GGATTGGCCGAGATCCTTTGGCGATGAACAAACCATTAATGCCCTTGATC
AGGCCTACAGATCCTGTCTGCAGCAGAACATTTCTGTAGCGGAATACGTG
GGAGTTCTTTGCGAGAGATTCGGAGTGGAAGGACCTTTGGAGTCGCAGGC
GGACTACATCCATAATGTCCAGACACTCTTTGCCCTCTACTTGGCCGCCA
GTCAGGCGTGGGAAGCAAGCTTTCTAGACCAT

BO19872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15161-RA 1251 CG15161-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15161-RA 1643 CG15161-RA 287..1535 16..1264 6245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18614447..18615509 1264..202 5315 100 Minus
2L 23513712 2L 18615634..18615820 202..16 935 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:09:12 has no hits.

BO19872.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:32 Download gff for BO19872.complete
Subject Subject Range Query Range Percent Splice Strand
CG15161-RA 249..1496 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:50 Download gff for BO19872.complete
Subject Subject Range Query Range Percent Splice Strand
CG15161-RA 288..1535 17..1266 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:08 Download gff for BO19872.complete
Subject Subject Range Query Range Percent Splice Strand
CG15161-RA 288..1535 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:08 Download gff for BO19872.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18614445..18615508 203..1266 99 <- Minus
2L 18615634..18615819 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:50 Download gff for BO19872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18614445..18615508 203..1266 99 <- Minus
arm_2L 18615634..18615819 17..202 100   Minus

BO19872.pep Sequence

Translation from 16 to 1282

> BO19872.pep
MNFYDEEITIGGPDSKHLSSVQMEPRNGGTGGGRGGAGGGGPGAVGGEGA
VRRAAAGRHRRMFQNNSTDDDGLLQDIIDHDDEAEDSEDDDDSEMQLPQG
MTMGVGMTGLVPGPNMQKRPGSNRSSKQVPDDTLSSGSEEAAMGGRMGSG
GARGGAKLPHQKLTLPMRGSASGAGRSKRQDDQSFIMSADKWEDLSVPGE
LKELFPYIVKYTPQTIDTPFHLQPFIPEFVPAVGDVDALLKVQAPPLLQP
QRQKDLNDHLEKLGLWLLDEPSGAQSEPSLLNMKLRSVLSGSMGRNPRHA
SSASLVPTARSGKDIEKWITEVEQVHMTQSMYDVQPRKDIDALLEDWPRS
FGDEQTINALDQAYRSCLQQNISVAEYVGVLCERFGVEGPLESQADYIHN
VQTLFALYLAASQAWEASFLDH

BO19872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15161-PA 416 CG15161-PA 1..416 1..416 2180 100 Plus