Clone BO19878 Report

Search the DGRC for BO19878

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:198
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG8852-RA
Protein status:BO19878.pep: Imported from assembly
Sequenced Size:2023

Clone Sequence Records

BO19878.complete Sequence

2023 bp assembled on 2010-11-05

GenBank Submission: KX797481

> BO19878.complete
GAAGTTATCAGTCGACATGGGCAGCTCGCATTTTTCGGTGGCGATGACGC
AGTGCGTCTTCCTCGTTGTCGTATCGCAGATTTTGTCACACGTGCGGGCA
GCTGGCGATGCGATGTCTTCCGCCAACGAATCAATATCGTTGCCACCGGC
TTGCGTCATTCGGGCAACGCTCTATAAGACATCTTCGTCGGAAAGGAGTC
AAAACGATTTTGGGCTGCCTCTGGCAATAGATTGCAGTGAGAACAGTAGC
ATGGGGATGAATTACTTCGATTTGGGCGCCCAAAGAGTGGCCGGAAAGAG
GCACGTTTCGCTGGATGGCTTTCAGACACCACCCTTGGGAATCTCGAGCT
ATGGCTTGGAGTACCTGGACAATTGTGTGGATCTGGAAAGTGTCGAGATC
CAACGTTTTGTGGGCGATGCCACCCTGAAACTGAGCTGTGGAGGAGCTCT
GATCCCCAACCTGACCGCAGTATCTTTCAGATACAACGAGCTGGGTACAT
TGAGTGGAGAAACTATCCAGGACTTGCCACATCTTAAAATACTACACTTG
CAACAGAACTCACTGAGGTACCTAGAATACTTTAAGGAGCATTCTGACTT
GGAAGAACTTCTGATACAGGACGAACGGGATTTGGTCTTGAGGTTTAATG
AAATCCTAAATCAGCTGCCAGAGCTGAGAAGGCTTAGTTTGCGAAATGTA
GAAAAGATTGAGGACCAATTCCTTAGAATCTTACCAGAAAACTTAACGGA
TCTGATAATCGAGAATACGCCCATTCAACCAGGAGTTTTGTACTTGACCG
AAGGCGTAGCGAAACTGGTTAACGTAACCATCACAAATTGCCAGCTGAAG
GGATTTGCATTGCAACCTGCACACAATTTGGATATTATGTATCTAAACCT
AAGTGGCAATGCCATATCTTCGTTGAACATAAGTTTTGAAAGTGGACCAA
GCACCCTACTGACCTTGGATTTGAGCCGAAATAGATTGGAGCACTTGAAT
TTCACCTGGTTCTATAGAACCACCAGTCTTCGTAGTCTTCACCTGCAGGA
AAACCACTTCCATTCATTGTCCCTCTTCCAATTGGGCTTTATTTCCTCAG
CGAGCATTCACCACATTGACCTGAGATCCAATGAATTGATGAGCTTCCGG
GATACAGAAAATGCTGATCTACCGTCCTGGAACCCACAGCTTCGAATTTC
CATCGATGACAATCCTTGGAGCTGCCAGTGGATGCTGAATTTCTCGCACA
TGCAACCTCAACTCTTTAGACTATTCCAGTACTCCAAGTATATATCCCAC
ATCAATATAAATGGCCTGAGTTGCACACCGCAAGAGCCGCCCTCGGAAGA
ACCGCCCAAGGTGCGAAGAATCATGCACGTGAGGATCAATGGGACAGACT
CTTCGATTCCCGTGCCACATCCACATGGAAATGTTTCCAGTTTCACTGTC
CTTTACGGCAACCCCGTAGAACTGCACCGAAGTCAGCGATCTTTAGCCTT
GATAATCGTGTTTATGTTGCCCCTGGGCATCGCATTCCTCTTCCTGTTGC
TATATCTATACCTCCATTGCGAGCGGCTCTTCCACTTGTCCTATTACGCC
TCGGGATTGCCCTGTTTTGGTGGCGAAAAATCATCCAGTGGGCCGAGGTT
TGTGGATCATGTGGACATAGTGCGCTATCCCATTGCTAATGGCGGTTCCA
GTTGCCCAGTGGATGTGGAAACCGAATTGCCAGATGGATACGAGACTCCT
GTAAGTGGAGGTACCTCGATTTGCAATTGCACTGGTCACAGAGAATCCAC
CTGCTCGAGGACCCATCATGTCACCTACGAGTCCTTACCAGCTGAGCTGC
CCTATCAACTGTACGCAGAGATCAAGGAGCAGGCGGATGAGAATGGGGAT
GCGGATGAGGTGCTGGCCGTGACTACCGGCCCTACGGCTCCCATCTACGA
TCATCTGTCGTTTGTGGAGGAGATGCCAAAACTGGATGAACTGAGAGATA
TATCCGCAAGCTTTCTAGACCAT

BO19878.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8852-RA 1992 CG8852-PA 1..1989 17..2005 9945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8852-RA 2398 CG8852-RA 79..2067 17..2005 9945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3525209..3527197 17..2005 9945 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:33:09 has no hits.

BO19878.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-05 18:07:11 Download gff for BO19878.complete
Subject Subject Range Query Range Percent Splice Strand
CG8852-RA 77..2065 17..2007 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:48 Download gff for BO19878.complete
Subject Subject Range Query Range Percent Splice Strand
CG8852-RA 79..2067 17..2007 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:30 Download gff for BO19878.complete
Subject Subject Range Query Range Percent Splice Strand
CG8852-RA 79..2067 17..2007 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:30 Download gff for BO19878.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3525209..3527197 17..2007 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:48 Download gff for BO19878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3525209..3527197 17..2007 99   Plus

BO19878.pep Sequence

Translation from 16 to 2023

> BO19878.pep
MGSSHFSVAMTQCVFLVVVSQILSHVRAAGDAMSSANESISLPPACVIRA
TLYKTSSSERSQNDFGLPLAIDCSENSSMGMNYFDLGAQRVAGKRHVSLD
GFQTPPLGISSYGLEYLDNCVDLESVEIQRFVGDATLKLSCGGALIPNLT
AVSFRYNELGTLSGETIQDLPHLKILHLQQNSLRYLEYFKEHSDLEELLI
QDERDLVLRFNEILNQLPELRRLSLRNVEKIEDQFLRILPENLTDLIIEN
TPIQPGVLYLTEGVAKLVNVTITNCQLKGFALQPAHNLDIMYLNLSGNAI
SSLNISFESGPSTLLTLDLSRNRLEHLNFTWFYRTTSLRSLHLQENHFHS
LSLFQLGFISSASIHHIDLRSNELMSFRDTENADLPSWNPQLRISIDDNP
WSCQWMLNFSHMQPQLFRLFQYSKYISHININGLSCTPQEPPSEEPPKVR
RIMHVRINGTDSSIPVPHPHGNVSSFTVLYGNPVELHRSQRSLALIIVFM
LPLGIAFLFLLLYLYLHCERLFHLSYYASGLPCFGGEKSSSGPRFVDHVD
IVRYPIANGGSSCPVDVETELPDGYETPVSGGTSICNCTGHRESTCSRTH
HVTYESLPAELPYQLYAEIKEQADENGDADEVLAVTTGPTAPIYDHLSFV
EEMPKLDELRDISASFLDH

BO19878.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8852-PA 663 CG8852-PA 1..663 1..663 3463 100 Plus