BO19882.complete Sequence
3829 bp assembled on 2010-10-20
GenBank Submission: KX798876
> BO19882.complete
GAAGTTATCAGTCGACATGTCCGAGAAAAACCTGAAAGTGGGCGCCCGGG
TCGAGCTGACCGGCAAGGATCTGCTTGGCACGGTTGCCTACGTGGGGATG
ACCAGCTTCGCCGTCGGCAAGTGGGTGGGCGTCGTGCTGGACGAGCCGAA
GGGCAAAAACAGCGGCTCCATCAAGGGCCAGCAGTACTTCCAGTGCGATG
AGAACTGTGGCATGTTTGTGCGACCCACGCAGCTGCGTCTGCTGGAGGCT
GCTCCTGGCAGCAGGCGCAGCATCGAGGATGTCAGCGGGGCTACGCCCAC
GGCTGCCCAACCCACAAAGGCGCGGCTGAGCAGCTCTCGCACCTCGCTCT
CCTCCAGTCGCCAATCGCTGCTGGGTTCCCGCACCCAGTTGACCACTTCT
CTGAGTGAACGCACTGCCTCCAGCAGCAGTATTGGCCCGAGGAAATCTTT
GGCGCCGCAAAACAGCAAGGATAAGGAGTCCCCCAGCACTTCATTGGCAG
AAGGAGCCCCAGCAGCAAGCGGTGGCAACGGTGCCGCTTCGCATGCCTCC
TCCAAACGGGCTTCCTTCGTGGAGACGGGCTTCCTTGAAATTCTTAAGCC
GCAGTTCACGCCTTCCCAGCCACTGCGATCGCCCTCTTTCACCATGCCCT
CCAACTCCGGTGCTGAAGACAAGGTCGCCCTGCTGGAGGCACAGAAAACG
AGCGCCGAGCTGCAGGCTCAGCTGGCTGATCTCACCGAGAAGCTGGAAAC
TTTAAAGCAGCGCAGGAACGAGGATAAAGAAAGGTTGCGGGAGTTCGACA
AGATGAAGATTCAGTTTGAGCAGCTTCAAGAGTTTCGAACGAAAATCATG
GGTGCTCAGGCTTCGCTTCAGAAGGAGTTACTGCGCGCCAAACAGGAGGC
CAAGGATGCAATCGAGGCCAAGGAGCAGCATGCTCAGGAAATGGCAGATC
TGGCAGACAATGTGGAGATGATCACGCTGGACAAGGAAATGGCCGAGGAG
AAGGCCGACACGCTGCAGCTGGAGCTAGAGTCCTCCAAGGAGCGTATTGA
AGAGTTGGAGGTAGATCTGGAGCTCTTACGCTCGGAGATGCAAAACAAGG
CCGAATCTGCCATCGGAAATATTTCTGGCGGCGGCGATTCGCCGGGCCTC
TCTACTTATGAATTCAAACAGCTGGAGCAACAGAACATTCGTTTGAAGGA
AACACTAGTGCGTCTGAGGGATCTATCTGCTCACGACAAGCACGACATCC
AAAAGTTGAGCAAGGAACTGGAGATGAAGCGCTCTGAAGTCACCGAACTG
GAGCGCACCAAGGAGAAGCTTAGTGCCAAGATTGATGAACTGGAGGCCAT
AGTCGCCGACTTGCAGGAACAAGTCGATGCTGCACTTGGTGCCGAGGAAA
TGGTGGAGCAGCTGGCTGAAAAGAAAATGGAATTGGAAGACAAAGTAAAA
CTGCTCGAGGAGGAAATTGCCCAATTGGAGGCCTTGGAGGAAGTGCACGA
ACAGCTGGTGGAGAGTAACCACGAACTGGAGCTTGATCTGCGCGAGGAAT
TGGATCTCGCCAATGGGGCCAAAAAGGAGGTGCTGCGAGAGCGGGATGCT
GCCATTGAAACCATCTATGATCGCGACCAAACTATCGTTAAGTTTAGGGA
ACTGGTACAGAAGCTAAACGACCAACTAACTGAGTTAAGGGATCGCAATT
CTAGCAACGAAAAGGAGTCGTTGCAGGATCCCAGTTTGAAAATGGTCACC
GAAACCATCGACTACAAACAAATGTTCGCCGAATCCAAGGCTTACACTCG
CGCCATCGACGTTCAACTGCGCCAGATTGAGCTGAGCCAGGCCAATGAGC
ATGTCCAGATGCTTACCGCCTTCATGCCTGAGTCATTCATGAGTCGCGGT
GGCGATCACGACTCAATCCTTGTGATTCTGCTAATTTCACGAATTGTCTT
TAAGTGCGACATTGTTGTTTCGCAAACGAGAGAGCGTTTCCCACCAGTGG
ATGCGATTACCAGGGAGGCGGTGACCCAAGGCCATGCCGTCCAGCAGTAT
GCCTTCAAGTGTCGCCTGTTGCACTACGTCCACAGCCTGCAGTGTGCCCT
TCACCAGATCCTCTACGGACTCAACAGTTGTCAACCGGACACACTCCTGA
GAGCCGGAAGTTCCCTGCCCGAAATGGTGGCTCAAGAAAAGATAGTGGAC
GGTATTATCGAACTGCTGAAATCCAACCAGCTGGACGAGAACAGTACCAC
GGATAATATTGAGAAATGTGTGGCCTTCTTCAATGCCATGAACTCCGTAC
TTCTAGCCGGTGAACAGCTCCTCAACGAGATTCAGATGATCCGGGACTGC
GTGGCCTCCTTGGGAGCAGCTTGTGAGAGCATTCTCAGCGACACGGCCAT
TGCAAAGGTGATCATTCAAGAGGCGGGCGCCACCAGCGATTCAGTGCTGC
TGATCCAGTTCCTTAACGAGAACATGGAAAGCGTGCGGCAGCAAGTTAAG
TTGATCAAGCGTCGCCTGCCAAGCGATCAGCACGTGATTAAGAGCGGTCT
ATCGCAGCACAAGGTGGAGGCGATGCGTGGTCTAGCCCAGAACATCAGTC
GCATCATGTCGGCGATGCACCAGGCCACCAAGCAGTCGCTCGCCGCCATT
GTTTCCACCATCGAGAGCGACAATGCAGCGGAGCACACTCTGCCCCAGGA
GAAGTACTGGGCCCTGTTGACCGCCTCCTGCGAGCGTATTTACGAACAGG
ATGATCGCGGACCGACACAGAACTTTAAGACCTTGCTGGCGCAAGCAAAC
TCCGATCTTCAGCTCATTGCCCAACATCTTCTGGACAAGGAGTACGACAT
CATTTCTGCAGCCAATAATGCCAGTAATCAGCAGAAATCGGGTGCCCACA
GCACGCCCATTACTCAGAGGGCGCAGCTAATCAAGAAACAACTGGAGCAG
AAGAACGTGCTGGCCGCCACGCTAGAGAATCGCGAGGCGGACGTCAAACA
GCTGAAGGTTGCAGCCAAGATGAAGCAGAACGAATTGAGCGAGATGCAGA
TCCGAAAGGATCTAGCGGAGAAGAAGCTAAGCGTACTGCAAAACGAGTAC
GAGCACGCGGTCGACAAGTGGAAGCAGAAGTACGAGGAAACCTCCTTGCA
GCTGCAGCTTAAGGAGAAGGAGTTTGAGGAGACGATGGACCACCTGCAAA
GCGATATCGATGCGCTGGAGAGCGAGAAGAGCGATCTACGCGACAAGCTG
AAGCTGAACTCGACTACAGGCAAGGTTCAGCCCGGCTCGGAATCCCACTC
CCCGCACAATATATCGCTATCAGGCAACACGTCCACTGCTCCGGGCATCA
GCAATGTATCCTACTCTGCTCCTGCCGGCACTGCTCCAGTGGTGGCCGAG
GAAGTGGAGTTGCTGAAGAACGCCTTCAACCAGGAGCGCAACCAACGACT
GCGTCTGCAGGCACAGGATATGCGTGCCAAGTTGTCCCAGTTTGAGCCCC
TGCATGTGCCTCAGCCACAGGATCAGCGCATAACCGCTTTGGAATCCGAG
CTGACCAGGATGAAGCACGCCTGGGTATTGTCGCTGCTGCAGGTGCGCTC
GCAGGATTCAGTGAATTCCGGTACACGTATCGACGCCGTGGCACTCCAAA
GGCGCAACCAGCCAGTTCCACTCAAGGGCGAGATCAGCTCGAAGGCTTCC
CAGCTGGCCTCCGACATCCTGACGGAGTATCTGCAAAGGAAACCCCATCG
TGCAACTCACGGACAGTTCGCCTCCTTTCCCACCGTCGATGTGAAGCGCG
TGCTGCAGATCGCAAGCTTTCTAGACCAT
BO19882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gl-RA | 3798 | CG9206-PA | 1..3795 | 17..3811 | 18975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gl-RA | 4550 | CG9206-RA | 286..4084 | 13..3811 | 18980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13931743..13934190 | 1364..3811 | 12240 | 100 | Plus |
| 3L | 28110227 | 3L | 13929845..13931199 | 13..1367 | 6760 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:07:31 has no hits.
BO19882.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:36 Download gff for
BO19882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gl-RA | 288..4082 | 17..3813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:14 Download gff for
BO19882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gl-RA | 290..4084 | 17..3813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:58 Download gff for
BO19882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gl-RA | 290..4084 | 17..3813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:58 Download gff for
BO19882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13931746..13934190 | 1367..3813 | 99 | | Plus |
| 3L | 13929849..13931198 | 17..1366 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:14 Download gff for
BO19882.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13922949..13924298 | 17..1366 | 100 | -> | Plus |
| arm_3L | 13924846..13927290 | 1367..3813 | 99 | | Plus |
BO19882.pep Sequence
Translation from 16 to 3829
> BO19882.pep
MSEKNLKVGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSG
SIKGQQYFQCDENCGMFVRPTQLRLLEAAPGSRRSIEDVSGATPTAAQPT
KARLSSSRTSLSSSRQSLLGSRTQLTTSLSERTASSSSIGPRKSLAPQNS
KDKESPSTSLAEGAPAASGGNGAASHASSKRASFVETGFLEILKPQFTPS
QPLRSPSFTMPSNSGAEDKVALLEAQKTSAELQAQLADLTEKLETLKQRR
NEDKERLREFDKMKIQFEQLQEFRTKIMGAQASLQKELLRAKQEAKDAIE
AKEQHAQEMADLADNVEMITLDKEMAEEKADTLQLELESSKERIEELEVD
LELLRSEMQNKAESAIGNISGGGDSPGLSTYEFKQLEQQNIRLKETLVRL
RDLSAHDKHDIQKLSKELEMKRSEVTELERTKEKLSAKIDELEAIVADLQ
EQVDAALGAEEMVEQLAEKKMELEDKVKLLEEEIAQLEALEEVHEQLVES
NHELELDLREELDLANGAKKEVLRERDAAIETIYDRDQTIVKFRELVQKL
NDQLTELRDRNSSNEKESLQDPSLKMVTETIDYKQMFAESKAYTRAIDVQ
LRQIELSQANEHVQMLTAFMPESFMSRGGDHDSILVILLISRIVFKCDIV
VSQTRERFPPVDAITREAVTQGHAVQQYAFKCRLLHYVHSLQCALHQILY
GLNSCQPDTLLRAGSSLPEMVAQEKIVDGIIELLKSNQLDENSTTDNIEK
CVAFFNAMNSVLLAGEQLLNEIQMIRDCVASLGAACESILSDTAIAKVII
QEAGATSDSVLLIQFLNENMESVRQQVKLIKRRLPSDQHVIKSGLSQHKV
EAMRGLAQNISRIMSAMHQATKQSLAAIVSTIESDNAAEHTLPQEKYWAL
LTASCERIYEQDDRGPTQNFKTLLAQANSDLQLIAQHLLDKEYDIISAAN
NASNQQKSGAHSTPITQRAQLIKKQLEQKNVLAATLENREADVKQLKVAA
KMKQNELSEMQIRKDLAEKKLSVLQNEYEHAVDKWKQKYEETSLQLQLKE
KEFEETMDHLQSDIDALESEKSDLRDKLKLNSTTGKVQPGSESHSPHNIS
LSGNTSTAPGISNVSYSAPAGTAPVVAEEVELLKNAFNQERNQRLRLQAQ
DMRAKLSQFEPLHVPQPQDQRITALESELTRMKHAWVLSLLQVRSQDSVN
SGTRIDAVALQRRNQPVPLKGEISSKASQLASDILTEYLQRKPHRATHGQ
FASFPTVDVKRVLQIASFLDH
BO19882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gl-PA | 1265 | CG9206-PA | 1..1265 | 1..1265 | 6252 | 100 | Plus |
| CG9279-PC | 1339 | CG9279-PC | 278..1333 | 109..1261 | 1491 | 32.8 | Plus |
| CG9279-PB | 1339 | CG9279-PB | 278..1333 | 109..1261 | 1491 | 32.8 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 187..1228 | 21..1101 | 361 | 20 | Plus |
| CLIP-190-PS | 1653 | CG5020-PS | 125..1280 | 8..1101 | 359 | 20.2 | Plus |
