BO19886.complete Sequence
1630 bp assembled on 2010-10-20
GenBank Submission: KX798349
> BO19886.complete
GAAGTTATCAGTCGACATGTTGCCCCCGTCCTGGCATCTAATTGGGGCCC
TCCTAGTGCTCGCGGCAACAGCGGGGGACTCCACCAACAAGATCATCTTG
CCGCAGATTCTAAACGGTGGCGGTGGCGGCGGGGGCGTCGGAACTGCCCA
GGGCAAACATCCGTCTGGATCCAAGACGGTGGCAACTGGAGTGGTTCCAA
ACTTCGGTGGAGCAGCTGGCAATGGAGCGGGCGGAGGAGGACCTGTGGCT
GGCAGCGGAACCGGAAGCACCGTGGTCGGCAGCAATGGCGTGATTGTGGC
CGGAGGCGGGGCCAATGTGCCGACCTCGAATTTAAACATTGTCGTCGAAG
AACCCGAATTTACTGAATACATCGAAAACGTAACTGTACCTGCTGGACGT
AATGTTAAACTCGGTTGCTCCGTGAAAAATCTGGGCTCATATAAGGTCGC
CTGGATGCACTTCGAGCAGTCCGCCATCCTGACCGTTCACAATCACGTGA
TCACGCGCAATCCGCGCATCAGTGTCACGCACGACAAGCACGACAGGCAC
CGCACGTGGTATTTGCACATAAACAATGTGCACGAGGAGGACCGGGGTCG
ATATATGTGCCAGATCAATACGGTGACGGCCAAAACGCAGTTTGGCTACC
TAAACGTTGTCGTTCCCCCCAACATCGACGACTCACTGAGCTCCAGCGAT
GTGATTGTGCGAGAGGGAGCCAACATTTCGCTGAGATGCCGGGCCAGCGG
TAGTCCCAGACCCATTATCAAATGGAAACGCGACGATAACTCCCGCATAG
CCATCAATAAGAATCACATAGTGAACGAATGGGAGGGCGACACTCTCGAG
ATAACTCGCATTTCCCGACTGGACATGGGCGCCTATCTGTGCATCGCCTC
CAATGGGGTTCCACCCACGGTTTCCAAGCGCATCAAAGTCAGCGTGGACT
TTCCTCCAATGCTGCTTATACCCCATCAGTTGGTTGGTGCTCCCGAAGGT
TTCAACGTCACCATCGAATGCTTCACAGAGGCACATCCCACTTCTCTGAA
CTATTGGACACGTGGCGAGGGACCAATCATACACGATTCGCACAAGTACA
AAGTGGAAGCCACAGTCGGATTGCCAGCTTATAAAACCCATATGAAGTTG
ACCATCATCAATGTGAGCAGTGGCGATGATGGTATTTACAAATGTGTGGC
CAAGAATCCGAGAGGGGAAACGGATGGCATCATACGACTGTACGTTTCAT
ATCCTCCAACCACTGCCTCATCGGGTATATACTCCACGGATACGCATTGG
GGGGAAAATGGGATCAACAATAATTATGCTTATGGTGGCCCCGACTCCAC
GCGATCGATTTATGCGCAGGATAAAAATACGCGATATCAATCGAATTTGA
ACGAAATCGGCTTATCTGAACAAAAATCCTTCCTAGATAAGACGCAGAAT
CCGTTGTTGGCCAATGGCAACGCCAACGAGGCGGATGCGGAATCCAACGG
GGCCCGGGGTCACAACCCTTCGATGGCCATTGCGTGGCTGTTCGTCGTCA
TCGCGACACTGTTGTTAACAATCCGATCTGCGGTTGGTTCTAGCCATAGC
CTAAGTCTATGTGCAAGCTTTCTAGACCAT
BO19886.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31708-RB | 1599 | CG31708-PB | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG31708-RA | 1599 | CG31708-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG31708-RC | 1539 | CG31708-PC | 1..1363 | 17..1379 | 6815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31708-RB | 3562 | CG31708-RB | 693..2288 | 17..1612 | 7980 | 100 | Plus |
| CG31708-RA | 3444 | CG31708-RA | 575..2170 | 17..1612 | 7980 | 100 | Plus |
| CG31708-RC | 3384 | CG31708-RC | 575..1937 | 17..1379 | 6815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9066080..9066401 | 338..17 | 1610 | 100 | Minus |
| 2L | 23513712 | 2L | 9052905..9053140 | 1612..1377 | 1180 | 100 | Minus |
| 2L | 23513712 | 2L | 9060710..9060928 | 662..444 | 1095 | 100 | Minus |
| 2L | 23513712 | 2L | 9059692..9059851 | 821..662 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 9055262..9055412 | 1101..951 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 9055020..9055162 | 1244..1102 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 9053298..9053430 | 1376..1244 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 9059471..9059601 | 950..820 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 9062398..9062506 | 447..339 | 545 | 100 | Minus |
| 2L | 23513712 | 2L | 6391145..6391346 | 645..444 | 530 | 84.2 | Minus |
| 2L | 23513712 | 2L | 6385903..6385993 | 950..860 | 260 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:10:14 has no hits.
BO19886.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:47 Download gff for
BO19886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31708-RB | 696..2286 | 22..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:40 Download gff for
BO19886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31708-RA | 580..2170 | 22..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:47 Download gff for
BO19886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31708-RA | 580..2170 | 22..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:47 Download gff for
BO19886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9066080..9066396 | 22..338 | 100 | | Minus |
| 2L | 9053298..9053429 | 1245..1376 | 100 | <- | Minus |
| 2L | 9052903..9053140 | 1377..1614 | 99 | <- | Minus |
| 2L | 9055020..9055162 | 1102..1244 | 100 | <- | Minus |
| 2L | 9055262..9055412 | 951..1101 | 100 | <- | Minus |
| 2L | 9059471..9059599 | 822..950 | 100 | <- | Minus |
| 2L | 9059692..9059850 | 663..821 | 100 | <- | Minus |
| 2L | 9060710..9060926 | 446..662 | 100 | <- | Minus |
| 2L | 9062400..9062506 | 339..445 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:40 Download gff for
BO19886.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9052903..9053140 | 1377..1614 | 99 | <- | Minus |
| arm_2L | 9053298..9053429 | 1245..1376 | 100 | <- | Minus |
| arm_2L | 9055020..9055162 | 1102..1244 | 100 | <- | Minus |
| arm_2L | 9055262..9055412 | 951..1101 | 100 | <- | Minus |
| arm_2L | 9059471..9059599 | 822..950 | 100 | <- | Minus |
| arm_2L | 9059692..9059850 | 663..821 | 100 | <- | Minus |
| arm_2L | 9060710..9060926 | 446..662 | 100 | <- | Minus |
| arm_2L | 9062400..9062506 | 339..445 | 100 | <- | Minus |
| arm_2L | 9066080..9066396 | 22..338 | 100 | | Minus |
BO19886.pep Sequence
Translation from 16 to 1630
> BO19886.pep
MLPPSWHLIGALLVLAATAGDSTNKIILPQILNGGGGGGGVGTAQGKHPS
GSKTVATGVVPNFGGAAGNGAGGGGPVAGSGTGSTVVGSNGVIVAGGGAN
VPTSNLNIVVEEPEFTEYIENVTVPAGRNVKLGCSVKNLGSYKVAWMHFE
QSAILTVHNHVITRNPRISVTHDKHDRHRTWYLHINNVHEEDRGRYMCQI
NTVTAKTQFGYLNVVVPPNIDDSLSSSDVIVREGANISLRCRASGSPRPI
IKWKRDDNSRIAINKNHIVNEWEGDTLEITRISRLDMGAYLCIASNGVPP
TVSKRIKVSVDFPPMLLIPHQLVGAPEGFNVTIECFTEAHPTSLNYWTRG
EGPIIHDSHKYKVEATVGLPAYKTHMKLTIINVSSGDDGIYKCVAKNPRG
ETDGIIRLYVSYPPTTASSGIYSTDTHWGENGINNNYAYGGPDSTRSIYA
QDKNTRYQSNLNEIGLSEQKSFLDKTQNPLLANGNANEADAESNGARGHN
PSMAIAWLFVVIATLLLTIRSAVGSSHSLSLCASFLDH
BO19886.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31708-PB | 532 | CG31708-PB | 1..532 | 1..532 | 2813 | 100 | Plus |
| CG31708-PA | 532 | CG31708-PA | 1..532 | 1..532 | 2813 | 100 | Plus |
| CG31708-PC | 512 | CG31708-PC | 1..512 | 1..532 | 2682 | 96.2 | Plus |
| CG42368-PA | 467 | CG42368-PA | 15..465 | 72..521 | 1320 | 59 | Plus |
| CG34391-PE | 469 | CG34391-PE | 38..426 | 107..498 | 829 | 45.1 | Plus |
