BO19891.complete Sequence
3070 bp assembled on 2010-10-20
GenBank Submission: KX799653
> BO19891.complete
GAAGTTATCAGTCGACATGGTTGCCTGGCTGACGGTTAAGTCAGTGGCCA
TCTTTTTGGGCCTGGCCTCTACTGCTTTTTGTGTGGCCACGATTGTGCTG
GCCGTTCAGAATGCGGACCTGGAGAACGATCTGCAGGATGCCCTCGATAA
GATCGACGCATTGACGGTGGACACCACGTCCACGTCCTCCACCTCTACCA
GCACTTCCACGACCACCACCACTGCAAATCCCAATGGGCCCACGGATGAC
ACCGAGCCTGGCTCTACCACCACACCTGGCGTAGGAGGTGACACAACCCC
CAGTGCAGGAACATCTCCGGGTGGTGAAACTTCGCCATCATCCAGTACAG
GAAGCACCACCAATCCCATCTATCCGACATTGCCGACAGGACTTCCTGAT
CCTGAAAAGATCGAATGGCGCCTGCCCACGGAACTGACGCCCATCAAGTA
CAAGGTGTACTACCATCCCGACTTGACGACCGGCGCCTGTGAGGGAACCG
TGTCCATTCAGTTCCAGCTGAACGCGATCACCAACCTGATCGTCCTGCAC
GCCAAGGAGCTCAATGTGCACAGCATCAGCATCCTGAACATGATGGCGCG
CATACGCGTGGCCATCGATAGCATCAACTTGGATGAGTCCCGGGAGCTGC
TCCTGATCACGCTAAGAGAGGTCCTCAGTATGAACAAGGCCTACACACTG
TCCGCAAGTTTCGACTGCGATCTGAGCAGTCTGGTGGGCAGCTACATCAG
CAACTACACGAATGCCGATGGAGTAGATAGATCAATCATTTCCACAAAGT
TTGAGCCCACTTATGCCCGCCAAGCATTCCCCTGCTTCGATGAGCCCGCC
CTTAAGGCTCAGTTCACCATAACGGTGGCCCGTCCAAGTGGTGATGAGTA
CCATGTGCTGTCCAACATGCCAGTGGCCAGCGAGTATGTCGATGGCGATA
TCACCGAGGTGACTTTCGCGGAGACCGTACCCATGAGCACCTATCTGGCC
GCCTTTGTGGTGTCTGATTTTCAATACAAGGAAACCACTGTGGAGGGAAC
CAGCATCGCTCTGAAAGTCTATGCGCCACCAGCGCAGGTGGAGAAAACCC
AGTACGCCCTGGACACTGCGGCCGGAGTGATGGCCTACTACATCAACTAT
TTCAATGTTTCGTATGCCCTACCCAAATTGGATCTGGTTGCCATACCCGA
TTTCGTGTCCGGTGCTATGGAAAACTGGGGATTGGTCACGTTCCGGGAGA
CGGCTCTTCTGTACGACGAATCTACCAGTTCCAGCGTGAATAAGCAGCGT
GTGGCCATCGTCGTGGCCCATGAGTTGGCTCACCAGTGGTTCGGAAACCT
GGTAACCATGAACTGGTGGAACGATTTGTGGCTAAACGAGGGTTTCGCAT
CATTCCTTGAGTACAAGGGAGTAAAGCAAATGCATCCGGAATGGGATATG
GACAATCAGTTTGTTATTGAGGAACTGCACCCGGTGCTGACCATTGATGC
CACCTTAGCCTCCCATCCGATTGTCAAGTCCATTGAGAGTCCAGCCGAGA
TCACGGAGTACTTCGATACCATCACCTATTCAAAGGGAGCCGCCTTAGTA
CGCATGCTTGAGAATCTGGTGGGCGAGGAAAAGTTGAGGAACGCCACCAC
CCGCTATTTGGTGCGTCATATCTACAGTACTGCCACCACCGAGGATTACC
TCACCGCAGTCGAGGAGGAGGAGGGCCTGGAATTTGACGTGAAGCAGATC
ATGCAGACCTGGACGGAGCAGATGGGTCTTCCGGTTGTGGAGGTGGAGAA
AAGTGGCAGTACTTATAAGCTCACCCAAAAGCGTTTCCTGGCCAACGAAG
ATGACTACGCAGCCGAAGCTGAAGCATCGTCCTTCAACTACCGTTGGTCG
ATTCCCATTACCTACACGAGCAGCATCAACAGTGAAGTCCAATCACTAAT
ATTCAACCACAATGACAATGAGGCCACCATAACGCTTCCGGAAGAGGCCA
GCTGGATTAAGATTAACACGAATCAAGTGGGCTACTACCGGGTGAACTAC
GGCAGCGAACAGTGGGCGGAACTCATATCGGCCCTGAAGAACTCCCGGGA
AACCTTCAGCACCGCCGATCGCGCTCATCTGCTGAACGATGCCAATACCC
TGGCCGCTGCCGGACAGCTTAACTACTCCGTGGCACTGGATCTGATATCT
TACCTGGAGAGCGAGCAGGACTACGTGCCCTGGAGCGTAGGCACCTCCGC
CCTGGCTACGTTAAGGAACCGCGTATACTACACGGACTTGTACACTAATT
ACACCACCTACGCCCGTAAACTGCTTACGCCCATCGTAGAAAAGGTCACG
TTTACCGTGGCAGCCGATCATCTGGAAAATCGCCTCCGTATTAAGGTGCT
GAGCTCAGCCTGCAGCTTGGGACATGAGAGCTCCTTGCAACAGGCGGTCA
CGCTCTTCAACCAGTGGCTAGCCAGCCCCGAGACCCGGCCCAATCCGGAT
ATCCGAGACGTTGTCTACTACTATGGTCTGCAACAGGTGAACACAGAGGC
TGCCTGGGATCAAGTTTGGAAGCTGTATCTGGACGAGAGTGATGCCCAGG
AAAAGCTGAAGTTGATGAACTGCCTAACCGCCGTGCAGGTGCCATGGCTG
TTGCAGCGTTACATCAACTGGGCCTGGGATGAGAGCAATGTCCGCCGCCA
GGACTACTTCACCCTGCTTGGATATATATCCACCAATCCGGTGGGTCAGA
GTCTTGTGTGGGATTACGTGCGTGAAAACTGGGAGAAGTTGGTGGATCGT
TTCGGCATCAATGAACGCACCTTGGGTCGTCTGATCCCCACGATCACTGC
CCGCTTCTCAACAGAAACCAAGCTGGAAGAGATGCAGCAGTTCTTTGCCA
AATATCCCGAGGCTGGAGCCGGAACTGCGGCCCGTCAACAGGCGTTGGAA
GCGGTGAAGGCAAACATCAAATGGCTAGCGGCCAACAAGGCCCAGGTGGG
CGAATGGTTGGCCAATTACGTTCAACAGTCCAGCGTCACCAACCGCATTC
AGGCAAGCTTTCTAGACCAT
BO19891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:14:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RA | 3039 | CG32473-PA | 1..3036 | 17..3052 | 15180 | 100 | Plus |
| CG32473-RB | 2712 | CG32473-PB | 436..2709 | 779..3052 | 11370 | 100 | Plus |
| CG32473-RC | 3078 | CG32473-PC | 802..3075 | 779..3052 | 11370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RA | 3273 | CG32473-RA | 78..3113 | 17..3052 | 15180 | 100 | Plus |
| CG32473-RB | 3002 | CG32473-RB | 569..2842 | 779..3052 | 11370 | 100 | Plus |
| CG32473-RC | 3635 | CG32473-RC | 1202..3475 | 779..3052 | 11370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13310144..13311109 | 779..1744 | 4830 | 100 | Plus |
| 3R | 32079331 | 3R | 13311953..13312625 | 2380..3052 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 13311404..13311895 | 1888..2379 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 13302798..13303180 | 27..409 | 1915 | 100 | Plus |
| 3R | 32079331 | 3R | 13304124..13304496 | 408..780 | 1865 | 100 | Plus |
| 3R | 32079331 | 3R | 13311174..13311317 | 1744..1887 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 13313341..13313573 | 1377..1620 | 595 | 84.8 | Plus |
| 3R | 32079331 | 3R | 13313710..13313973 | 1888..2169 | 545 | 81.2 | Plus |
| 3R | 32079331 | 3R | 29247180..29247288 | 1398..1290 | 320 | 86.2 | Minus |
| 3R | 32079331 | 3R | 13300347..13300431 | 1314..1398 | 305 | 90.6 | Plus |
| 3R | 32079331 | 3R | 13297841..13298076 | 2699..2934 | 280 | 74.6 | Plus |
| 3R | 32079331 | 3R | 13295918..13296098 | 1172..1352 | 245 | 75.7 | Plus |
| 3R | 32079331 | 3R | 29242633..29242712 | 1398..1319 | 220 | 85 | Minus |
| 3R | 32079331 | 3R | 29236928..29237007 | 1392..1313 | 205 | 83.8 | Minus |
| 3R | 32079331 | 3R | 29143469..29143569 | 1292..1392 | 190 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:14:32 has no hits.
BO19891.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:08 Download gff for
BO19891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RA | 73..3108 | 17..3054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:04 Download gff for
BO19891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RA | 78..3113 | 17..3054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:22 Download gff for
BO19891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RA | 78..3113 | 17..3054 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:22 Download gff for
BO19891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13302798..13303180 | 27..409 | 100 | -> | Plus |
| 3R | 13304126..13304496 | 410..780 | 100 | -> | Plus |
| 3R | 13310146..13311108 | 781..1743 | 100 | -> | Plus |
| 3R | 13311174..13311317 | 1744..1887 | 100 | -> | Plus |
| 3R | 13311404..13311895 | 1888..2379 | 100 | -> | Plus |
| 3R | 13311953..13312625 | 2380..3054 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:04 Download gff for
BO19891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9128520..9128902 | 27..409 | 100 | -> | Plus |
| arm_3R | 9129848..9130218 | 410..780 | 100 | -> | Plus |
| arm_3R | 9135868..9136830 | 781..1743 | 100 | -> | Plus |
| arm_3R | 9136896..9137039 | 1744..1887 | 100 | -> | Plus |
| arm_3R | 9137126..9137617 | 1888..2379 | 100 | -> | Plus |
| arm_3R | 9137675..9138347 | 2380..3054 | 99 | | Plus |
BO19891.pep Sequence
Translation from 16 to 3070
> BO19891.pep
MVAWLTVKSVAIFLGLASTAFCVATIVLAVQNADLENDLQDALDKIDALT
VDTTSTSSTSTSTSTTTTTANPNGPTDDTEPGSTTTPGVGGDTTPSAGTS
PGGETSPSSSTGSTTNPIYPTLPTGLPDPEKIEWRLPTELTPIKYKVYYH
PDLTTGACEGTVSIQFQLNAITNLIVLHAKELNVHSISILNMMARIRVAI
DSINLDESRELLLITLREVLSMNKAYTLSASFDCDLSSLVGSYISNYTNA
DGVDRSIISTKFEPTYARQAFPCFDEPALKAQFTITVARPSGDEYHVLSN
MPVASEYVDGDITEVTFAETVPMSTYLAAFVVSDFQYKETTVEGTSIALK
VYAPPAQVEKTQYALDTAAGVMAYYINYFNVSYALPKLDLVAIPDFVSGA
MENWGLVTFRETALLYDESTSSSVNKQRVAIVVAHELAHQWFGNLVTMNW
WNDLWLNEGFASFLEYKGVKQMHPEWDMDNQFVIEELHPVLTIDATLASH
PIVKSIESPAEITEYFDTITYSKGAALVRMLENLVGEEKLRNATTRYLVR
HIYSTATTEDYLTAVEEEEGLEFDVKQIMQTWTEQMGLPVVEVEKSGSTY
KLTQKRFLANEDDYAAEAEASSFNYRWSIPITYTSSINSEVQSLIFNHND
NEATITLPEEASWIKINTNQVGYYRVNYGSEQWAELISALKNSRETFSTA
DRAHLLNDANTLAAAGQLNYSVALDLISYLESEQDYVPWSVGTSALATLR
NRVYYTDLYTNYTTYARKLLTPIVEKVTFTVAADHLENRLRIKVLSSACS
LGHESSLQQAVTLFNQWLASPETRPNPDIRDVVYYYGLQQVNTEAAWDQV
WKLYLDESDAQEKLKLMNCLTAVQVPWLLQRYINWAWDESNVRRQDYFTL
LGYISTNPVGQSLVWDYVRENWEKLVDRFGINERTLGRLIPTITARFSTE
TKLEEMQQFFAKYPEAGAGTAARQQALEAVKANIKWLAANKAQVGEWLAN
YVQQSSVTNRIQASFLDH
BO19891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-PA | 1012 | CG32473-PA | 1..1012 | 1..1012 | 5227 | 100 | Plus |
| CG32473-PC | 1025 | CG32473-PC | 115..1025 | 107..1012 | 4023 | 86.9 | Plus |
| CG32473-PB | 903 | CG32473-PB | 16..903 | 130..1012 | 4014 | 88.7 | Plus |
| CG8773-PB | 994 | CG8773-PB | 3..989 | 5..998 | 2805 | 55.1 | Plus |
| CG8774-PB | 885 | CG8774-PB | 8..885 | 133..1011 | 2238 | 49 | Plus |
