BO19909.complete Sequence
1315 bp assembled on 2010-01-14
GenBank Submission: KX800056
> BO19909.complete
GAAGTTATCAGTCGACATGGCCGCGACCTCGTACATGACGCCGCCGAGCG
GTGATCTGGACATGGCCCTCGGAGGCGGTGGCTATCACACCTCGTCGCCG
CGCTCGGCGGCTGATGCCGGTGAAATGAAGTACATGCAGCACCATCATCA
TCATCATGCCGCTGCCGCGGCAGCTGCCCACCATCAGTTGCCCTCGTCGC
CATCGCCCAATGGCCAGGGCAATGGTGGCGGACTTGGATTGGGTTCCGGT
TCCGGGTTGGGCTCATGGAGTGCCCTCCATCCGGATCCGTGGATGCAAAC
CCATCATACGCACCATCTGCCCGCCGCCGCTGCCGTTGCCTCGGCCGCTG
ATACCGTCAAGCAGGAGATGTCGCATCTCTCGCAGCAGACGCGCATCCAA
CAGGGCATGGCCTCGCCCCATGCCGCCTGGCATGCCCCCCATGCGGGACA
CTATGCGCCAACGGGCGGGTCACCGTTGCAGTACCATCATGCCATGAACG
GAATGCTCCATCATCCGGCCCATGCGGTTGCAGCGGCCCATCATCAGAGT
GTGGCGCCACTGCATCATACGCTGCGCGGGGAATCGCCACAGCTGCACAT
ACACCATCACATGGGCGGCGGCGATCGGGATGCCATAAGCGGCGGCGAGG
AGGACACTCCCACGTCCGATGATCTGGAGGCCTTTGCCAAGCAGTTCAAG
CAGCGCCGAATCAAGCTGGGCTTTACCCAGGCCGATGTGGGCCTGGCACT
GGGCACTCTCTATGGCAATGTGTTCTCCCAGACGACCATCTGCAGATTCG
AGGCACTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCGCTGCTG
CAGAAGTGGCTGGAGGAGGCGGACTCCACAACGGGTTCACCCACGTCCAT
TGACAAGATCGCCGCTCAGGGGCGTAAGCGCAAGAAACGCACCAGCATCG
AGGTGAGCGTGAAGGGGGCACTGGAGCAGCACTTCCACAAGCAGCCGAAG
CCATCCGCCCAGGAGATAACCTCGTTGGCCGACTCCTTGCAGCTGGAGAA
GGAGGTGGTACGCGTGTGGTTCTGCAATCGGCGGCAGAAGGAGAAGCGCA
TGACGCCGCCAAATACGCTCGGCGGCGACATGATGGACGGCATGCCGCCG
GGCCATATGCATCATGGTGGCTATCATCCGCATCACGATATGCACGGCAG
TCCGATGGGCACACACTCCCACTCGCACAGTCCGCCCATGCTGAGCCCAC
AGAATATGCAATCCTCGGCGGTAGCGGCGCATCAGTTGGCGGCCCACGCA
AGCTTTCTAGACCAT
BO19909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-RF | 2181 | CG10037-PF | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| vvl-RE | 2181 | CG10037-PE | 1..1281 | 17..1297 | 6405 | 100 | Plus |
| vvl-RC | 2181 | CG10037-PC | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-RF | 4380 | CG10037-RF | 669..1949 | 17..1297 | 6405 | 100 | Plus |
| vvl-RE | 4380 | CG10037-RE | 669..1949 | 17..1297 | 6405 | 100 | Plus |
| vvl-RC | 4380 | CG10037-RC | 669..1949 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6790826..6792106 | 17..1297 | 6405 | 100 | Plus |
| 2L | 23513712 | 2L | 12685229..12685408 | 695..874 | 510 | 85.6 | Plus |
| 2L | 23513712 | 2L | 12626573..12626754 | 683..864 | 505 | 85.2 | Plus |
| 2L | 23513712 | 2L | 12626964..12627021 | 1044..1101 | 245 | 94.8 | Plus |
| 2L | 23513712 | 2L | 12685617..12685674 | 1044..1101 | 200 | 89.7 | Plus |
Blast to na_te.dros performed 2014-11-27 00:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 5951..6036 | 1148..1064 | 129 | 65.5 | Minus |
BO19909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:18 Download gff for
BO19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RA | 667..1947 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:06 Download gff for
BO19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RA | 669..1949 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:26 Download gff for
BO19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vvl-RC | 669..1949 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:26 Download gff for
BO19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6790826..6792106 | 17..1299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:06 Download gff for
BO19909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6783926..6785206 | 17..1299 | 99 | | Plus |
BO19909.pep Sequence
Translation from 16 to 1315
> BO19909.pep
MAATSYMTPPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHHHAAA
AAAAHHQLPSSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHH
LPAAAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTG
GSPLQYHHAMNGMLHHPAHAVAAAHHQSVAPLHHTLRGESPQLHIHHHMG
GGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYG
NVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSIDKIAA
QGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRV
WFCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHHGGYHPHHDMHGSPMGTH
SHSHSPPMLSPQNMQSSAVAAHQLAAHASFLDH
BO19909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vvl-PF | 742 | CG10037-PF | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PE | 726 | CG10037-PE | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PC | 713 | CG10037-PC | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PD | 427 | CG10037-PD | 1..427 | 1..427 | 2322 | 100 | Plus |
| vvl-PA | 427 | CG10037-PA | 1..427 | 1..427 | 2322 | 100 | Plus |
