Clone BO19951 Report

Search the DGRC for BO19951

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:199
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG10621-RA
Protein status:BO19951.pep: Imported from assembly
Sequenced Size:1027

Clone Sequence Records

BO19951.complete Sequence

1027 bp assembled on 2010-11-19

GenBank Submission: KX797210

> BO19951.complete
GAAGTTATCAGTCGACATGGGTTTGACGCGCGTGCTGGTGAAGGATGGCG
GTTTCGGCACCCAGATGACCGTCCATGTGGGTGACTCTGTGGATGGGGAT
CCGCTATGGAGTGCCCGCTTCAATGCCACCAATCCGGCGGCCATTATCAG
CACCCACCTGGACTTTTTGCAGAATGGTGCCGATATCATTTTGACCAACA
CCTACCAGTCCAGTGTCGATGGTTACATGGAGTACCTGGAGCTGGACGAG
GAGCAGAGCATCGAGCTGATAAAGAACACGGTCCGCCTGGCCCACATCGC
CAAGGAACGCTATCTCACCGAGTGCTATCAGGCGCAGCTGTCGGTGCAGG
AGGGATACCCTTTGATCATTGCCTCCATTGGACCCTTTGGGGCCCACCTG
CACGATGGCTCCGAGTACACCGGTAGCTATGCCGACTTTGTGCCGGCCAA
GGAGATTACGGACTGGCATCGCGTGAGGATCGAAGCGTGCTTGGAGGCTG
GTGTGGATGCGCTGGCCATCGAGACGATTCCCTGTCAAATGGAGGCGGAG
GCCCTGGTGGAGATGCTGTGCGATGATTATCCGGATGTGAAGTTCTGGGT
GGCCTTCCAGTGCAAGGATGAGAATACCCTGGCGCATGGAGAAACCTTTG
CGGACGCGGCGAATGCTATTTGGGACCTCTTGGCTGAACGAAATGCCCAG
GATAAGTGCCTGGCCATCGGAGTAAATTGTGTGCATCCGAAGTTTGTGAC
CCCGCTCTTTAAGAGTTTGAATGGTGACCGCGAAGTGGGTGAGCAGATAC
CGTTGGTGGTGTACCCCAATAGCGGAGAGGTATACGACGTGGTCAACGGC
TGGCAGGGAAGGGAGCACTGTGTGCCCTTGGCGAACTACGTTCCGGAGTG
GGCGCAACTGGGGGCCAAGGTCATTGGGGGATGCTGTCGCACTTATGCGA
GGGATATACGCCACATCGGGGAGGCCATTCGCGACTGGAACAAACTGAAG
AAGCTCTCAGCAAGCTTTCTAGACCAT

BO19951.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10621-RC 996 CG10621-PC 1..993 17..1009 4965 100 Plus
CG10621-RB 996 CG10621-PB 1..993 17..1009 4965 100 Plus
CG10621-RA 996 CG10621-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10621-RC 1419 CG10621-RC 290..1283 16..1009 4970 100 Plus
CG10621-RB 1519 CG10621-RB 390..1383 16..1009 4970 100 Plus
CG10621-RA 1302 CG10621-RA 173..1166 16..1009 4970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18952342..18952998 1009..353 3285 100 Minus
2L 23513712 2L 18953157..18953337 354..174 905 100 Minus
2L 23513712 2L 18953404..18953561 173..16 790 100 Minus
2L 23513712 2L 18956799..18956949 239..89 185 74.8 Minus
Blast to na_te.dros performed on 2014-11-26 15:35:12 has no hits.

BO19951.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-19 09:48:53 Download gff for BO19951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10621-RA 164..1156 17..1011 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:16 Download gff for BO19951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10621-RA 174..1166 17..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:14 Download gff for BO19951.complete
Subject Subject Range Query Range Percent Splice Strand
CG10621-RA 174..1166 17..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:14 Download gff for BO19951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18952340..18952997 354..1011 99 <- Minus
2L 18953158..18953337 174..353 100 <- Minus
2L 18953404..18953560 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:16 Download gff for BO19951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18952340..18952997 354..1011 99 <- Minus
arm_2L 18953158..18953337 174..353 100 <- Minus
arm_2L 18953404..18953560 17..173 100   Minus

BO19951.pep Sequence

Translation from 16 to 1027

> BO19951.pep
MGLTRVLVKDGGFGTQMTVHVGDSVDGDPLWSARFNATNPAAIISTHLDF
LQNGADIILTNTYQSSVDGYMEYLELDEEQSIELIKNTVRLAHIAKERYL
TECYQAQLSVQEGYPLIIASIGPFGAHLHDGSEYTGSYADFVPAKEITDW
HRVRIEACLEAGVDALAIETIPCQMEAEALVEMLCDDYPDVKFWVAFQCK
DENTLAHGETFADAANAIWDLLAERNAQDKCLAIGVNCVHPKFVTPLFKS
LNGDREVGEQIPLVVYPNSGEVYDVVNGWQGREHCVPLANYVPEWAQLGA
KVIGGCCRTYARDIRHIGEAIRDWNKLKKLSASFLDH

BO19951.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10621-PC 331 CG10621-PC 1..331 1..331 1770 100 Plus
CG10621-PB 331 CG10621-PB 1..331 1..331 1770 100 Plus
CG10621-PA 331 CG10621-PA 1..331 1..331 1770 100 Plus
CG10623-PC 331 CG10623-PC 14..328 6..325 915 53.7 Plus
CG10623-PB 331 CG10623-PB 14..328 6..325 915 53.7 Plus