BO19952.complete Sequence
1300 bp assembled on 2010-10-13
GenBank Submission: KX796600
> BO19952.complete
GAAGTTATCAGTCGACATGACTGACAAGTTAGATGCGGAACAATTTAACG
ACGACGAACTAGAGGCACCTGCTTGGCTGAATCGTCAATTTATAGAGGAA
ATTCTGAGCGCGTACGAAGATTCCCCGGAACTAAAAGTTGTCGATCTTAA
AATCACACCCGCAAGTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCC
GAACAACTGCAGAGTGTACCACCGCGAAGGGAAAGTTCAGTAGGCCACTA
ATCATCAAGGCGATGCCCGAGCAGGATGGACACAAGAAGGATATGCTCAG
CGAATCGCATCTATTCGAAACCGAGATCGGAATGTACTGCCAGGTTCTTC
CGGAATTCGAGAGAATTCTGCGGGAATCCGGAGACGATACAAAGCTATTT
GTTCCCTGCATTTACCATAGCCTGGAGCCGCGTAAGGTGATGATATTTGA
GGACCTTGTGCCCCAGGGATATTATGTCATTCGAGACCGTCCGGTTGCTC
AGGAAGAACTCAAAACAGCCTTTGCTAAACTGGCCAAATGGCATGCAATT
AGCATGAAATACATTAAGGAGCAACCTGACTTCCTAAAGGAGTTTAAGTA
TGGCCTCTTCGAGATGCCCACTGTAAAGACCGACCCTTTTATTACAACTG
GCATGCAGAGCTTCATTGAAATGCTGGACAGATTACCAGAGCTAAGAAAG
TATAAGCCTCATTTCGAAAAGATAAAAGATAAGTACATGCAACGACTACA
AGCTGTGATGAAGGAATACCATGAAAATCGAAAGAGTGATGCCTTCTATG
TCCTCTGTCATGGTGACTTCCATCTTCGCAATATGATGTTCAAGAACAAC
AAGGGGACGGGAGCCCACGAGGATACCATGCTGGTGGATTTCCAGATTAG
CAACCTTTGTCCCATCACAATTGATCTCACATATTCCATCTATATGCTGA
TGGAGCCGGAACAACGCAGAGAAATGGGAAAGGACTTGATTAATCACTAC
TTAACCGTTTTGGTTGCCACCCTCAAGAGCATTGGATACCCAGGTGAACT
GCCAACCCAAGCGAAACTCTGGGATGAAATCCATAAGAACAAGTATTATG
ATTTCTTTTTGTTGAGCACTTTTCTGCCCTTGATTTTGGCCATCAAATCG
AAGAGTTTTAAAGTGAACGACCTTATACAGGATCCGGAAACCCGCCAAAA
AACCTACTTTTTGGATACATATGTTAAAGATGTTTCCAAACTATTGCCGA
AATTCGAGCAACTTGGCTACTTTAAATGTCTAGCAAGCTTTCTAGACCAT
BO19952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31300-RA | 1269 | CG31300-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG31104-RA | 1263 | CG31104-PA | 31..1103 | 53..1125 | 1525 | 76.1 | Plus |
| CG11893-RA | 1251 | CG11893-PA | 15..722 | 31..738 | 810 | 74.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31300-RA | 1474 | CG31300-RA | 72..1337 | 17..1282 | 6330 | 100 | Plus |
| CG31104-RA | 1382 | CG31104-RA | 91..1163 | 53..1125 | 1525 | 76.1 | Plus |
| CG11893-RA | 1415 | CG11893-RA | 53..760 | 31..738 | 810 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25283691..25284245 | 17..571 | 2775 | 100 | Plus |
| 3R | 32079331 | 3R | 25284305..25284835 | 570..1100 | 2655 | 100 | Plus |
| 3R | 32079331 | 3R | 25284905..25285087 | 1100..1282 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 25286135..25286665 | 570..1100 | 810 | 76.8 | Plus |
| 3R | 32079331 | 3R | 25289941..25290648 | 31..738 | 810 | 74.3 | Plus |
| 3R | 32079331 | 3R | 25285563..25285978 | 53..468 | 685 | 77.6 | Plus |
| 3R | 32079331 | 3R | 25304361..25304650 | 164..453 | 310 | 73.8 | Plus |
| 3R | 32079331 | 3R | 25287638..25287958 | 170..490 | 300 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:58:29 has no hits.
BO19952.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-13 10:03:33 Download gff for
BO19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31300-RA | 70..1335 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:27:51 Download gff for
BO19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31300-RA | 72..1337 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:54 Download gff for
BO19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31300-RA | 72..1337 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:54 Download gff for
BO19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25283691..25284245 | 17..571 | 100 | -> | Plus |
| 3R | 25284307..25284835 | 572..1100 | 100 | -> | Plus |
| 3R | 25284906..25285087 | 1101..1284 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:27:51 Download gff for
BO19952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21109413..21109967 | 17..571 | 100 | -> | Plus |
| arm_3R | 21110029..21110557 | 572..1100 | 100 | -> | Plus |
| arm_3R | 21110628..21110809 | 1101..1284 | 98 | | Plus |
BO19952.pep Sequence
Translation from 16 to 1300
> BO19952.pep
MTDKLDAEQFNDDELEAPAWLNRQFIEEILSAYEDSPELKVVDLKITPAS
AQGDHYASVMFRTTAECTTAKGKFSRPLIIKAMPEQDGHKKDMLSESHLF
ETEIGMYCQVLPEFERILRESGDDTKLFVPCIYHSLEPRKVMIFEDLVPQ
GYYVIRDRPVAQEELKTAFAKLAKWHAISMKYIKEQPDFLKEFKYGLFEM
PTVKTDPFITTGMQSFIEMLDRLPELRKYKPHFEKIKDKYMQRLQAVMKE
YHENRKSDAFYVLCHGDFHLRNMMFKNNKGTGAHEDTMLVDFQISNLCPI
TIDLTYSIYMLMEPEQRREMGKDLINHYLTVLVATLKSIGYPGELPTQAK
LWDEIHKNKYYDFFLLSTFLPLILAIKSKSFKVNDLIQDPETRQKTYFLD
TYVKDVSKLLPKFEQLGYFKCLASFLDH
BO19952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31300-PA | 422 | CG31300-PA | 1..422 | 1..422 | 2226 | 100 | Plus |
| CG31104-PA | 420 | CG31104-PA | 7..420 | 9..422 | 1647 | 72.2 | Plus |
| CG11893-PA | 416 | CG11893-PA | 1..416 | 1..422 | 1587 | 67.8 | Plus |
| CG13658-PB | 422 | CG13658-PB | 1..422 | 1..422 | 1440 | 62.6 | Plus |
| CG31436-PA | 420 | CG31436-PA | 9..416 | 9..417 | 1233 | 55.7 | Plus |
