BO19953.complete Sequence
1057 bp assembled on 2009-05-13
GenBank Submission: KX795652
> BO19953.complete
GAAGTTATCAGTCGACATGAAGACATTCCTGATTTTGGCATTCTTTGCTC
TGGCCGCCTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAG
AACGGCTGGTACGTTCCCCAGGAGGATGGCACTTCCGAGTGGGTGGACAT
GGACGTTGCCGAACAGTGGATGGAAGCCCAAGAGTTGCTGGAAAGTCGTG
GCTTGACCACCGTTCCCGTAAAGTTCTACCTTTACACCTCCTCCAACCCC
ACCAAGGGCAAGAAGATCACCGCCTCCACCAAGTCCATTGATGCCTCCAG
CTTTAACTCCGCCCATCCAACTCGCTTTGTGATCCACGGCTGGACCCAGA
GCTACACCGCCAGCATGAACAAGGACATCCGCAGTGCCTGGCTCTCCAGA
GGAGACTACAACGTGATCGTCGTCGACTGGGCCCGTGCTCGTTCCGTGGA
TTACGCGACTTCTGTTTTGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCA
AGATGATCAACTTCCTGAAGGACAACCACGGTCTGAATTTGAACGATTTG
TACGTGATTGGTCACAGCCTGGGCGCCCATGTGGCTGGATATGCCGGCAA
GAACACCGACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGC
CCCTCTTCAGCTACAACAAGCCCAACAAGCGTCTGAATTCCGACGATGCC
TGGTATGTGGAGTCCATCCAGACCAATGGTGGCACTCTGGGATTCCTGAA
GCCCATCGGCAAGGGAGCTTTCTACCCCAACGGAGGAAAGACCCAGCCCG
GATGCGGATTGGACCTGACTGGCGCCTGCTCCCACGGACGCTCTACAACC
TACTACGCCGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGG
AGACTACGAGGAAGCCGTTTCCAAGGAATGCGGAAGCACCTACTCCAGCG
TTCGCATGGGAGCTGATACCAATGCCTACATGGTCGAGGGTGACTACTAT
GTGCCCGTAAACAGCAAGGCTCCCTTCGGCATGATTAACGCAAGCTTTCT
AGACCAT
BO19953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-RA | 1026 | CG6277-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| CG6271-RA | 1026 | CG6271-PA | 1..1023 | 17..1039 | 3360 | 88.6 | Plus |
| CG6283-RA | 1020 | CG6283-PA | 298..1014 | 323..1036 | 1435 | 80.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-RA | 1085 | CG6277-RA | 31..1053 | 17..1039 | 5115 | 100 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 22..1044 | 17..1039 | 3360 | 88.6 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 323..1039 | 323..1036 | 1435 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27022103..27023086 | 1039..56 | 4920 | 100 | Minus |
| 3R | 32079331 | 3R | 27024996..27025960 | 1039..75 | 3235 | 89 | Minus |
| 3R | 32079331 | 3R | 27020282..27020998 | 1036..323 | 1435 | 80.3 | Minus |
| 3R | 32079331 | 3R | 27005957..27006583 | 1033..410 | 1045 | 78.1 | Minus |
| 3R | 32079331 | 3R | 27018673..27019142 | 1029..563 | 515 | 74.5 | Minus |
| 3R | 32079331 | 3R | 27017226..27017623 | 1029..632 | 385 | 73.1 | Minus |
| 3R | 32079331 | 3R | 27023148..27023187 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:25 has no hits.
BO19953.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:04 Download gff for
BO19953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 26..1048 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:50 Download gff for
BO19953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 31..1053 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:31 Download gff for
BO19953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6277-RA | 31..1053 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:31 Download gff for
BO19953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27022101..27023085 | 57..1041 | 99 | <- | Minus |
| 3R | 27023148..27023187 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:50 Download gff for
BO19953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22847823..22848807 | 57..1041 | 99 | <- | Minus |
| arm_3R | 22848870..22848909 | 17..56 | 100 | | Minus |
BO19953.pep Sequence
Translation from 16 to 1057
> BO19953.pep
MKTFLILAFFALAASAIPIKESERVHGENGWYVPQEDGTSEWVDMDVAEQ
WMEAQELLESRGLTTVPVKFYLYTSSNPTKGKKITASTKSIDASSFNSAH
PTRFVIHGWTQSYTASMNKDIRSAWLSRGDYNVIVVDWARARSVDYATSV
LAVAATGKKVAKMINFLKDNHGLNLNDLYVIGHSLGAHVAGYAGKNTDGQ
VHTIIGLDPALPLFSYNKPNKRLNSDDAWYVESIQTNGGTLGFLKPIGKG
AFYPNGGKTQPGCGLDLTGACSHGRSTTYYAEAVSEDNFGTMKCGDYEEA
VSKECGSTYSSVRMGADTNAYMVEGDYYVPVNSKAPFGMINASFLDH
BO19953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6277-PA | 341 | CG6277-PA | 1..341 | 1..341 | 1809 | 100 | Plus |
| CG6271-PA | 341 | CG6271-PA | 1..341 | 1..341 | 1626 | 88.9 | Plus |
| CG6283-PA | 339 | CG6283-PA | 1..338 | 1..340 | 1225 | 68.6 | Plus |
| CG6295-PA | 338 | CG6295-PA | 2..338 | 1..341 | 1219 | 66.7 | Plus |
| CG17191-PA | 337 | CG17191-PA | 1..336 | 1..340 | 1128 | 62.5 | Plus |
