Clone BO19954 Report

Search the DGRC for BO19954

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:199
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG42369-RA
Protein status:BO19954.pep: Imported from assembly
Sequenced Size:1237

Clone Sequence Records

BO19954.complete Sequence

1237 bp assembled on 2009-07-17

GenBank Submission: KX798133

> BO19954.complete
GAAGTTATCAGTCGACATGATGATCGAGTGGTGGCTGCCATGGGTGTGCC
TCTTGCCGCTCATGCAGGCGGATCCTGTTGCTCCCCAGCTGGATCTTGGT
GTGAAGGACTTCCAGCTGGAGCTTCTGCGCGAGTTAAGCGACCTGGTGCA
ACAGCGGATTGAACCGAGTCTCAACGACTACCTGGATCGTCTAGGACGCA
TTCCTCGGAATGCCAACTACACCGAAGAGATGAGTGCAGCTCGCGCAACA
CCAAAGCTTCAATTGAAGGTGACGCTCATCAAGCAGCTGCTCGACGTGCG
TCCGCACCTGGACACGGATATGGAGTACACCATTGTGCTGCGCAACCTGG
TCTTTCTGAACCGAGTCAGATCCACGCTGAGGGCTGCCGAGGAGACTAGC
ACACAAGAGATCCGAATGATGCGCATGCACCGCCTCTGCCAGCAACTTGA
CCGACCGGCTCCTCATCGCGGCAGTCGCCTGATCAACGAACAGACAGTCG
GGGCGGCATTGGGGCAACTCAATCTGACCAAAAAGGAGGTGAACTCCACC
GGCTTGGATCTCAATGAGTTCGGGGCGCAGCTGTACGAGCGGGTCAAGTT
ATCCGGCGCCGAAATCATCGACAACTACCTGCACATACTGCGTTCCCTGC
TGCAGGACATCATCGACGGTGACCATGCTGATCTGGCCGGGAGCAGTGCC
AAGCTGGACAAGATGCAGCAGCAGCTGGACGTCATGCTTGCCACGGAGGA
CTTCTTCGAGAAACGTCAACGGGTGTATGCGTACCTGGAGCACCACTTGC
GCACCGATTACGAGGAGATGCGGGACACATCGAGCAGCGAGCACATCACC
GAACATCTTCTCGCCCAGCTGAAGACCAAGGGACTGGACCTGTTCGTCAT
CTTTCTTTTTAGCAATTTTGAATTCCTAGACCTGGTGCACGAGCACTGGG
AGCAGCTGTTGCCACAGTCACCCAGTTTGCTATACGACGAGACCGCACGC
CAATTGTACGATCTGCAGCAGCTGTATCAGGTCTTCAAGCTGGACACGGA
GTGCGAGGCCAAGTACACGGCCTACTCGGACGCACTGCGTCGCTTGCACG
AGCGGACCGTGGAGCAGGGTCAGCGCAACCGGCACATCTTTGAGCTGCTC
CACAACGCGGCACAAAGCGTCGGCACGGTTACCTTCAACATGATCCGGGC
CAAGTGCAATGAGCTAAGAGCAAGCTTTCTAGACCAT

BO19954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG42369-RA 1206 CG42369-PA 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42369-RA 1397 CG42369-RA 157..1359 17..1219 6015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6395891..6397093 1219..17 6015 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:22:40 has no hits.

BO19954.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 12:13:26 Download gff for BO19954.complete
Subject Subject Range Query Range Percent Splice Strand
CG42369-RA 157..1359 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:27 Download gff for BO19954.complete
Subject Subject Range Query Range Percent Splice Strand
CG42369-RA 157..1359 17..1221 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:25 Download gff for BO19954.complete
Subject Subject Range Query Range Percent Splice Strand
CG42369-RA 157..1359 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:25 Download gff for BO19954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6395888..6397093 17..1221 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:27 Download gff for BO19954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6395888..6397093 17..1221 99   Minus

BO19954.pep Sequence

Translation from 16 to 1237

> BO19954.pep
MMIEWWLPWVCLLPLMQADPVAPQLDLGVKDFQLELLRELSDLVQQRIEP
SLNDYLDRLGRIPRNANYTEEMSAARATPKLQLKVTLIKQLLDVRPHLDT
DMEYTIVLRNLVFLNRVRSTLRAAEETSTQEIRMMRMHRLCQQLDRPAPH
RGSRLINEQTVGAALGQLNLTKKEVNSTGLDLNEFGAQLYERVKLSGAEI
IDNYLHILRSLLQDIIDGDHADLAGSSAKLDKMQQQLDVMLATEDFFEKR
QRVYAYLEHHLRTDYEEMRDTSSSEHITEHLLAQLKTKGLDLFVIFLFSN
FEFLDLVHEHWEQLLPQSPSLLYDETARQLYDLQQLYQVFKLDTECEAKY
TAYSDALRRLHERTVEQGQRNRHIFELLHNAAQSVGTVTFNMIRAKCNEL
RASFLDH

BO19954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG42369-PA 401 CG9511-PA 1..401 1..401 2059 100 Plus