BO19973.complete Sequence
1162 bp assembled on 2010-10-13
GenBank Submission: KX795507
> BO19973.complete
GAAGTTATCAGTCGACATGGCATCTCTGAGCGAAACACTTCGTAGCCACT
GGCCCATCGCTTTGTTCGGTGTGATCCTCTTCGTGGCTGGGGGCACGGAG
CTCTACTGGAACGAGGGACGAGCCGTGCACAATATGATGGCGCTGGACGA
GGCACACGCCGACATCTACTCGGTGCGCTTCACGGAGGAGGAACAGGAGG
TGGGCCTCGAGGGCAGAATCGTTCACCTATCCGGACCCATTCTCGTGGGC
GAACCGCTCACCGAACCCGACTACAACATTCAGTTGCTGGCGGTGAAGCT
CCGGCGACGCGTCCAAATGTACCAGTGGGTCGAGGAGGCGGTCGAGCACA
ACTACGGCGACAGCGTGGGAACGACGCATTCGGACTCCCGCACCTACTAT
TACACGCGGGAATGGCGTGATAAGATCGTGGACTCGCGAAACTTCTACAA
CCGCCACGGACACACGAATCCCAGTCACTTTCCCATCGAAAGCCACGTTC
AGGTGGCGGATGCCGTCTTCATTGGACGCTATGAACTGGGTGCGGAGGTG
AAGGAGAAGTTTAACAACTACCAGGAGCTCACTTCGGACATTCGGCCAGA
GGATAGTGGCGTCAAGCTGCATCTGGGCATATATTATCACACCAATGATG
TGTTCAATCCGGAGGTGGGTGACCTGCGCCTGCTCTTCAGCTTCGCGGGA
ATGGAGGGCGAGGTGTTCAGCGTGGTGGGCAAGCTGTCGGGCAACAAACT
GGTGCCGTACATAACCTCCCGTGGCGTTCCAGTGCTGCTCGTCTATCCGG
GTGGGCTCAGTGTCCAGGAAGTGTTCCGGTTGGAGGCTCGTGCCCAGGTC
TTGCACACCTGGTGGTGGCGCTTCGTCGGCTGGCTGCTGATCTTCTTCGG
CGTCACCTGCAACACCAAAATCCTTCGTCTGCTGTTTGTACGGGTGCCGC
TATTGGTGGCCTTGGCACCCGATCCTCAGTTCCCGGTTACGGGCAACCTA
CTCATCGCATTTTCGCTAGCTCTGACCATTGCGGCAGTCGCCTGGATCCT
GCATCGTCCTGTGATCGGCGCCTGCCTCTTACTGGCTGGCGCATCGCCTT
ACGTCTGGTTCACCCGCAATCTGGTCGACTACCATCGCCTGGACGCAAGC
TTTCTAGACCAT
BO19973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8111-RA | 1131 | CG8111-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8111-RA | 1340 | CG8111-RA | 88..1215 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7914059..7914651 | 935..343 | 2965 | 100 | Minus |
| 3L | 28110227 | 3L | 7914708..7915033 | 342..17 | 1630 | 100 | Minus |
| 3L | 28110227 | 3L | 7913789..7913997 | 1144..936 | 1045 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3069..3098 | 88..59 | 114 | 86.7 | Minus |
BO19973.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-13 10:09:10 Download gff for
BO19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8111-RA | 84..1211 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:27:56 Download gff for
BO19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8111-RA | 88..1215 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:03 Download gff for
BO19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8111-RA | 88..1215 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:03 Download gff for
BO19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7913787..7913997 | 936..1146 | 99 | <- | Minus |
| 3L | 7914059..7914651 | 343..935 | 100 | <- | Minus |
| 3L | 7914708..7915033 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:27:56 Download gff for
BO19973.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7906887..7907097 | 936..1146 | 99 | <- | Minus |
| arm_3L | 7907159..7907751 | 343..935 | 100 | <- | Minus |
| arm_3L | 7907808..7908133 | 17..342 | 100 | | Minus |
BO19973.pep Sequence
Translation from 16 to 1162
> BO19973.pep
MASLSETLRSHWPIALFGVILFVAGGTELYWNEGRAVHNMMALDEAHADI
YSVRFTEEEQEVGLEGRIVHLSGPILVGEPLTEPDYNIQLLAVKLRRRVQ
MYQWVEEAVEHNYGDSVGTTHSDSRTYYYTREWRDKIVDSRNFYNRHGHT
NPSHFPIESHVQVADAVFIGRYELGAEVKEKFNNYQELTSDIRPEDSGVK
LHLGIYYHTNDVFNPEVGDLRLLFSFAGMEGEVFSVVGKLSGNKLVPYIT
SRGVPVLLVYPGGLSVQEVFRLEARAQVLHTWWWRFVGWLLIFFGVTCNT
KILRLLFVRVPLLVALAPDPQFPVTGNLLIAFSLALTIAAVAWILHRPVI
GACLLLAGASPYVWFTRNLVDYHRLDASFLDH
BO19973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8111-PA | 376 | CG8111-PA | 1..376 | 1..376 | 1990 | 100 | Plus |
