BO19974.complete Sequence
1345 bp assembled on 2011-06-29
GenBank Submission: KX794022
> BO19974.complete
GAAGTTATCAGTCGACATGTTACGCGAGGCTCTTAGGATCGGCAACAGGC
GCTGGTACAGCTACAAGTCCGTCCGTCGTCCGAATCTGGGCGCCACAGGT
ACTCCAAAGATGGAGCCGCCAAAGGAACAGCCGGAGGCGTCCTCCAAAGC
GGAGAGCGGACATGGCAGCCTGGCCAAGCAACTGAGGGCCAAGATTCTGT
CCACCGGACCCATTCCTGTGGCCGAGTACATGCGCGAAGTGCTGACTAAT
CCCCAAGCTGGCTACTATATGAACCGGGATGTGTTCGGCAGAGAGGGCGA
CTTCATAACCTCCCCGGAAATATCACAGATCTTCGGAGAGCTCGTGGGAA
TTTGGCTGGTGAGCGAGTGGCGCAAAATGGGCAGTCCCTCGCCCTTTCAA
CTTGTGGAGCTCGGTCCGGGTCGCGGCACACTGGCCAGGGACGTGCTGAA
GGTGCTCACCAAGTTCAAGCAGGACGCCGAATTCTCAATGCACATGGTGG
AGGTCAGTCCGTTTCTGAGCAAGGCACAGGCACAGCGCTTCTGCTACTCC
CACCAAACCCTGCCGGAGGACGCACAGTTGCCCCATTACCAGGAGGGCAC
AACGGCCAGTGGAACGAAGGCATTCTGGCACCGTCGGCTAGAGGATGTGC
CCCAGGGATTCTCCCTAGTTCTCGCCCACGAGTTCTTCGACGCCCTGCCT
GTGCACAAGCTCCAACTCGTAGATGGCAAGTGGCAGGAGGTGCTCATCGA
TGTGGCATCCTCTGATGGCGCACAAGAAGCTAGCTTCCGATATGTGCTCT
CACGTAGCCAAACACCCGTTTCGAGTCTTTATCGACCGCTGCCCGGCGAG
ACACGATCCTGTTTGGAGCACTCCCTGGAGACGGAACGACAGGTGGGACT
GCTCGCCGAGCGCATCGAACGGGATGGCGGCATCGCTCTAATCATGGATT
ATGGCCATTTTGGCGAGAAAACCGACACTTTCCGGGCCTTCAAGCAGCAC
AAGCTGCACGATCCGCTGGTGGAGCCGGGCAGTGCTGATCTCACGGCCGA
TGTGGACTTCAAGCTAGTGCGGCACATTGCCGAGACACGCGGAAATGTCC
ACTGCTGCGGTCCCGTGGAGCAGGGACTGTTCCTGCAGCGAATGCAGGGT
GAGGCTCGACTGGAGCAACTGTTGGCACATGCGCTGCCCGAAAACCAGGA
GATCATTCGCTCCGGCTACGAGATGCTCACGGATCCAGCCCAGATGGGCA
CTCGCTTTAAGTTCCTGGCCATGTTTCCCGGCGTGCTAGCTGCCCACCTA
GACAAATACCCAGTCGTCGGATTTAGTGCAAGCTTTCTAGACCAT
BO19974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17726-RA | 1314 | CG17726-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17726-RA | 1409 | CG17726-RA | 39..1349 | 17..1327 | 6555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11227179..11228167 | 339..1327 | 4945 | 100 | Plus |
| 3R | 32079331 | 3R | 11226800..11227123 | 17..340 | 1620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:38:44 has no hits.
BO19974.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:50 Download gff for
BO19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 42..1352 | 22..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:23 Download gff for
BO19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 42..1347 | 22..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:06:01 Download gff for
BO19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 44..1349 | 22..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:57 Download gff for
BO19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 44..1349 | 22..1329 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:57 Download gff for
BO19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11226805..11227123 | 22..340 | 100 | -> | Plus |
| 3R | 11227181..11228167 | 341..1329 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:06:01 Download gff for
BO19974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7052903..7053889 | 341..1329 | 99 | | Plus |
| arm_3R | 7052527..7052845 | 22..340 | 100 | -> | Plus |
BO19974.pep Sequence
Translation from 16 to 1345
> BO19974.pep
MLREALRIGNRRWYSYKSVRRPNLGATGTPKMEPPKEQPEASSKAESGHG
SLAKQLRAKILSTGPIPVAEYMREVLTNPQAGYYMNRDVFGREGDFITSP
EISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKF
KQDAEFSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTASGT
KAFWHRRLEDVPQGFSLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSD
GAQEASFRYVLSRSQTPVSSLYRPLPGETRSCLEHSLETERQVGLLAERI
ERDGGIALIMDYGHFGEKTDTFRAFKQHKLHDPLVEPGSADLTADVDFKL
VRHIAETRGNVHCCGPVEQGLFLQRMQGEARLEQLLAHALPENQEIIRSG
YEMLTDPAQMGTRFKFLAMFPGVLAAHLDKYPVVGFSASFLDH
BO19974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17726-PA | 437 | CG17726-PA | 1..437 | 1..437 | 2285 | 100 | Plus |
