BO19989.complete Sequence
1054 bp assembled on 2009-05-13
> BO19989.complete
GAAGTTATCAGTCGACATGGAGAAGGTGGAGGCGGTAACAGTGTCCAATG
TTGATCCCTATAGGCGGATCCTAAACAAGGTGGTGTCCCAGCTGCTATTG
GACAAGGGGGCCGGCCAAGCGAGCAACCACAGCCTGGAGACGCTCACCCA
GATGCTGCAGGCGTTGATCTGGGAGATCGGCAATTCGGCGCATAACTACT
GCGAGCTAAGTGGACGCACGATGCCCACCGTGGGCGATGTCAGTTTGGCC
CTGATTAACATGGGCATTTCGATCTCCAATTTGGATCCGTACATGCGCAA
GGAGACGCACGTGCCCATTCCACTGCCCCCACAGCAGACGCAGCAGCGCC
CGCTGAGTCTGCTGCAAGCGGGCATCAAGGCCCCGCATCCCCACTACGTG
CCCAGCTACTTCCCTCCCATGCCCGATCCGCACGCCTACATACGGACGCC
CACGCACAAGCAGCCCGTAACAGAGTACGAGGCCATCAGGGAGAAGGCCG
CCTGCCAGAAGCGGGACATCGAGAAGGCGCTCACAAAGTTCCTCTGCAAG
ACCACGGAGACGAACAACCTCTTTCCCACCGAGGACAACATGTTTCCTTT
AATTGCCTGCAAACCGGCCTTTCCTCCCTATGCAGCCGCTTTAAATCCCA
CAGATCAGGTGTTTGACTTCGAGGAGCTGGAGTACCACTATCTGGTGGCC
AATCGCACAGAAGATGAGCCCAGCAAAGACGACGGCGAAGAGGGCGATAG
CGAAAACGAGGAGATAGATGGCGAAGAGGGCGATAGCGAAAACGAGGAGA
TGGATGGCGACAAATCCAAAGAGGAGAAGCCCGAGCTGGATATCAAGCCC
AATTCCAACACAAACAAGGCCATTTTGGAGAACCCCAACATCGATAATCC
CTATTTGCGGGCGGCTACTCTGCCCAAGCGATCCAAAAATTGCCCCACAC
CCGGAACCATGCCCAGCAGGAGTCTGGCCACCACGGCGCCAACGATACGA
ACGCCCTCCACTCTAGAGATAACCAAAACTAACCTTGCAAGCTTTCTAGA
CCAT
BO19989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf8-RA | 987 | CG7128-PA | 1..758 | 17..774 | 3775 | 99.9 | Plus |
| Taf8-RA | 987 | CG7128-PA | 718..984 | 770..1036 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf8-RA | 1341 | CG7128-RA | 90..848 | 16..774 | 3780 | 99.9 | Plus |
| Taf8-RA | 1341 | CG7128-RA | 808..1074 | 770..1036 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18102268..18102702 | 165..599 | 2175 | 100 | Plus |
| X | 23542271 | X | 18102949..18103215 | 770..1036 | 1335 | 100 | Plus |
| X | 23542271 | X | 18102059..18102207 | 16..164 | 745 | 100 | Plus |
| X | 23542271 | X | 18102758..18102886 | 600..728 | 645 | 100 | Plus |
| X | 23542271 | X | 18102942..18102989 | 727..774 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:06:38 has no hits.
BO19989.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:10 Download gff for
BO19989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf8-RA | 89..846 | 17..774 | 99 | == | Plus |
| Taf8-RA | 847..1072 | 811..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:40 Download gff for
BO19989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf8-RA | 849..1074 | 811..1038 | 99 | | Plus |
| Taf8-RA | 91..848 | 17..774 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:16 Download gff for
BO19989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf8-RA | 91..848 | 17..774 | 99 | == | Plus |
| Taf8-RA | 849..1074 | 811..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:16 Download gff for
BO19989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18102949..18103215 | 770..1038 | 99 | | Plus |
| X | 18102060..18102207 | 17..164 | 100 | -> | Plus |
| X | 18102268..18102702 | 165..599 | 100 | -> | Plus |
| X | 18102758..18102886 | 600..728 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:40 Download gff for
BO19989.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17996093..17996240 | 17..164 | 100 | -> | Plus |
| arm_X | 17996301..17996735 | 165..599 | 100 | -> | Plus |
| arm_X | 17996791..17996919 | 600..728 | 100 | == | Plus |
| arm_X | 17996982..17997248 | 770..1038 | 99 | | Plus |
BO19989.pep Sequence
Translation from 16 to 1054
> BO19989.pep
MEKVEAVTVSNVDPYRRILNKVVSQLLLDKGAGQASNHSLETLTQMLQAL
IWEIGNSAHNYCELSGRTMPTVGDVSLALINMGISISNLDPYMRKETHVP
IPLPPQQTQQRPLSLLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPTHKQP
VTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKP
AFPPYAAALNPTDQVFDFEELEYHYLVANRTEDEPSKDDGEEGDSENEEI
DGEEGDSENEEMDGDKSKEEKPELDIKPNSNTNKAILENPNIDNPYLRAA
TLPKRSKNCPTPGTMPSRSLATTAPTIRTPSTLEITKTNLASFLDH
BO19989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf8-PA | 328 | CG7128-PA | 1..328 | 1..340 | 1710 | 96.5 | Plus |
