BO19993.complete Sequence
1369 bp assembled on 2009-05-13
GenBank Submission: KX795017
> BO19993.complete
GAAGTTATCAGTCGACATGAAGCCGTTGATAGTGGTCGTGCTCGTGGGCC
TGATGGCAAGTGGCTGCCACATTGTTCACTCCCAGGAGCCTGGCGATGCT
GTGGAGCAGGAAGCCAGCGAGTCGGATGACGCACTTAAGATCAAAGAGAG
TCAGGCCAGCATAGCCGCCCAGGTGGAGGCCATGCTCGTGCACTTTCAGC
AGGAGGATCCGCAGGGTCTGCCCGGCGTGCCCGTGCCCGATCCGTTGGAG
GTGCCCAATGTGAAGAAGAGCATGGGCATGGCCAATCTGGACATGAAGCA
GGTCAAGGCGTATGGCTTGTCCAAGTTCCGCATTGATAAAATGAACCTAG
ACCTGAAGGAAATGAGATTCAACGGTGGCCTCCAGCTGGACCAGATGCTG
GTCAAGGGCCAGTACACCCTCAGTTCATTCTTTTCGAAAGCCAATGGACC
CTTTACAGTAGTCCTGAAGAATGTCTATGCCGAGGCAACCGCCTTCTTGG
CCGTCGAACGAGACGGTCAGCTGGCCACGGACCGCATCAAGATCGACATC
ACATTCTCGGACATGACAATGGACTTCCAGAACCTCGGCCTGGTGGGCAG
TGTCTTTCAGAGCGTGGTGAACGGTGCGCCCAACTTGGTCTTCGACGCCA
TGAAGCCATTTATGCTCCAGGAGGCGGACAAAAAGCTGCGCAGCGAGATC
AACGTAATGATCCAGAAAACCTTGGGCGAACGCCGACTGCCCAATTCCAT
AACGCCGCTGGACAGCGCCATTGCCATGGCACGCAAGATGGTTCGGCAGA
AGGGCTTCGATCCGTACCACCTGCCTGATGTCAATCGCACCATGGGCGTG
TTCAGTGTCCAGTTAGCACACACCTGGATCAATGGAATCTCTAGCTTCTA
CCGCGTGGGCAACATAACCGCTGGCATGGCCAACAAAACGGTGTCGGTCG
TTCTGCAAATAGGCACCCAGCAGGTGACGGGAGCCGGCCAGTGGGAGGTG
GGTGTGGGCATGATGACACGCGTCGGTCACGTACAATTTACGGTTCAGCA
CATACGCGCCACCGTTGGCCTGAGCCAATCCCTGGACACACGCAAGCGGG
CGCAGATCACCGATCTGCAGTTTGACATGGGCAACATACAGGTGCGATGT
GACGGAGCGGGAACGCTGGACTACGTCATGGAGTTTGCGGTGAACGTCAT
TCCCAACCTGCTGCGCTACCAGATCATGGACGCCATCGAGAACCCCATCA
AGCAGCGTGTGCAGGAGAAGTTCAACACCATCGATGTGGAGCAGGTCATC
AAGACCATGGCTCAGAACAACTTCAACTTTGACCCAAAGCTGTTGGGCTT
GGCAAGCTTTCTAGACCAT
BO19993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3246-RA | 1338 | CG3246-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3246-RA | 1511 | CG3246-RA | 102..1436 | 17..1351 | 6675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3460397..3461380 | 1351..368 | 4920 | 100 | Minus |
| 2L | 23513712 | 2L | 3461438..3461707 | 367..98 | 1350 | 100 | Minus |
| 2L | 23513712 | 2L | 3461770..3461851 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:12 has no hits.
BO19993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:08 Download gff for
BO19993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3246-RA | 125..1459 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:39 Download gff for
BO19993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3246-RA | 102..1436 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:21 Download gff for
BO19993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3246-RA | 102..1436 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:21 Download gff for
BO19993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3460394..3461380 | 368..1353 | 99 | <- | Minus |
| 2L | 3461438..3461706 | 99..367 | 100 | <- | Minus |
| 2L | 3461770..3461851 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:39 Download gff for
BO19993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3460394..3461380 | 368..1353 | 99 | <- | Minus |
| arm_2L | 3461438..3461706 | 99..367 | 100 | <- | Minus |
| arm_2L | 3461770..3461851 | 17..98 | 100 | | Minus |
BO19993.pep Sequence
Translation from 16 to 1369
> BO19993.pep
MKPLIVVVLVGLMASGCHIVHSQEPGDAVEQEASESDDALKIKESQASIA
AQVEAMLVHFQQEDPQGLPGVPVPDPLEVPNVKKSMGMANLDMKQVKAYG
LSKFRIDKMNLDLKEMRFNGGLQLDQMLVKGQYTLSSFFSKANGPFTVVL
KNVYAEATAFLAVERDGQLATDRIKIDITFSDMTMDFQNLGLVGSVFQSV
VNGAPNLVFDAMKPFMLQEADKKLRSEINVMIQKTLGERRLPNSITPLDS
AIAMARKMVRQKGFDPYHLPDVNRTMGVFSVQLAHTWINGISSFYRVGNI
TAGMANKTVSVVLQIGTQQVTGAGQWEVGVGMMTRVGHVQFTVQHIRATV
GLSQSLDTRKRAQITDLQFDMGNIQVRCDGAGTLDYVMEFAVNVIPNLLR
YQIMDAIENPIKQRVQEKFNTIDVEQVIKTMAQNNFNFDPKLLGLASFLD
H
BO19993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3246-PA | 445 | CG3246-PA | 1..445 | 1..445 | 2255 | 100 | Plus |
