Clone BO20002 Report

Search the DGRC for BO20002

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:200
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG6808-RA
Protein status:BO20002.pep: Imported from assembly
Sequenced Size:1159

Clone Sequence Records

BO20002.complete Sequence

1159 bp assembled on 2010-01-14

GenBank Submission: KX797443

> BO20002.complete
GAAGTTATCAGTCGACATGGAAATCAGCATTAAATGGAGCATGTGCCGCA
CTTGCCGCAAAAAAGGAACGCAATCCACGCTGCAGTCGCTCTTCGAGTCC
AATGCCCACAAGCTGTTGATCTCGTATGCCGGCACATCTGTGAAACCGGA
TGATGGACTGCCGGATCAAATTTGCACAGTCTGCTTGATGCAACTGGAGG
AGGTGGACAGATTTCTTAGCGCGTGCAAACAATCCGACGCGCACCTGAGA
AGCCTCGTTCGTCAAACTCTGTCCTCCGCATCGGCATTTGAGACGCTGGA
GGATAAGGACCAGCTTGAACAGAAAAAACGCGCCAGGAAGCAGAACATTT
CGGGGAGACTCATCGAAGAGAATCCTATTAACTTTAAGACTCAAGAGAAT
GCATTGGAAACGACCAAAGATGATGAAATCTTACCCATAAATAAATTTTC
AAGCGATTTCGTGTTCGATCTCAACGTGAATGCGGAAAACGAGAAAGACA
TACACCAGGAGGACTATACCATCAGTGATATGGATTTGGACAGGGAGATC
TCCGATCAAAATTACTCCGAAACGTATTCGCAAGAAAGCAGCGCTGCTAC
GGACAGTATTCAAGAGACAAGCGAGGATTACCATAATCTAGAGCCAAGTG
CCGACTACGTGATAGATCTAGGAGTGGCCTGCGAGCCGGACAAGTACAGA
TGCAAGATCTGCAGCAATACATACCGCTGCTTATCTCAGCTAAATGCACA
CTCGCAGGTGCACCGCAAGGAAAAGGACCACCAGTGCGAGGTTTGCCAAA
AGACATTCAGAGCCGCCTGCAACCTGAAAACACACATGCGGACGCACACG
GGCGAGAAACCTTACCAATGTTGCTACTGTTCGCGCCGTTTTGCCGACAA
CAGCACTCATCGCAAGCACGAACGTTTGCACACGAATGAAAGACCCTATG
CTTGCAACATATGTGGAAAAACATTCTCTCTGTCCTCCTCTCGTAACGCT
CACTACTACCTGCATTCGTCTGAAAAGTCTCACAAGTGTCTTATGTGTAA
AAAAGAATTTCGGCTTAAGCACCAACTTACAGCGCACGAGAAGTCTCTTG
CGCACCGTCTGATAGCTAAGGAGTACAGCGACGTGGTAGAAGCAAGCTTT
CTAGACCAT

BO20002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6808-RB 1128 CG6808-PB 1..1125 17..1141 5625 100 Plus
CG6808-RA 1128 CG6808-PA 1..1125 17..1141 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6808-RB 1447 CG6808-RB 61..1185 17..1141 5625 100 Plus
CG6808-RA 3138 CG6808-RA 1752..2876 17..1141 5625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11622206..11622856 790..140 3255 100 Minus
3R 32079331 3R 11621728..11621945 1141..924 1090 100 Minus
3R 32079331 3R 11622015..11622149 924..790 675 100 Minus
3R 32079331 3R 11622911..11623037 143..17 635 100 Minus
Blast to na_te.dros performed 2014-11-27 00:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
hopper2 1593 hopper2 HOPPER2 1593bp 937..1030 968..1061 110 57.4 Plus

BO20002.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:17 Download gff for BO20002.complete
Subject Subject Range Query Range Percent Splice Strand
CG6808-RA 1752..2876 17..1143 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:14 Download gff for BO20002.complete
Subject Subject Range Query Range Percent Splice Strand
CG6808-RA 1752..2876 17..1143 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:34 Download gff for BO20002.complete
Subject Subject Range Query Range Percent Splice Strand
CG6808-RA 1752..2876 17..1143 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:34 Download gff for BO20002.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11621726..11621944 925..1143 99 <- Minus
3R 11622015..11622149 790..924 100 <- Minus
3R 11622207..11622856 140..789 100 <- Minus
3R 11622915..11623037 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:14 Download gff for BO20002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7447448..7447666 925..1143 99 <- Minus
arm_3R 7447737..7447871 790..924 100 <- Minus
arm_3R 7447929..7448578 140..789 100 <- Minus
arm_3R 7448637..7448759 17..139 100   Minus

BO20002.pep Sequence

Translation from 16 to 1159

> BO20002.pep
MEISIKWSMCRTCRKKGTQSTLQSLFESNAHKLLISYAGTSVKPDDGLPD
QICTVCLMQLEEVDRFLSACKQSDAHLRSLVRQTLSSASAFETLEDKDQL
EQKKRARKQNISGRLIEENPINFKTQENALETTKDDEILPINKFSSDFVF
DLNVNAENEKDIHQEDYTISDMDLDREISDQNYSETYSQESSAATDSIQE
TSEDYHNLEPSADYVIDLGVACEPDKYRCKICSNTYRCLSQLNAHSQVHR
KEKDHQCEVCQKTFRAACNLKTHMRTHTGEKPYQCCYCSRRFADNSTHRK
HERLHTNERPYACNICGKTFSLSSSRNAHYYLHSSEKSHKCLMCKKEFRL
KHQLTAHEKSLAHRLIAKEYSDVVEASFLDH

BO20002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6808-PB 375 CG6808-PB 1..375 1..375 1995 100 Plus
CG6808-PA 375 CG6808-PA 1..375 1..375 1995 100 Plus
trem-PA 439 CG4413-PA 4..410 2..365 408 27 Plus
CG14710-PB 415 CG14710-PB 10..399 10..364 398 29.9 Plus
CG4854-PA 319 CG4854-PA 12..311 10..360 386 28.4 Plus