Clone BO20003 Report

Search the DGRC for BO20003

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:200
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptfd3F-RB
Protein status:BO20003.pep: Imported from assembly
Sequenced Size:1114

Clone Sequence Records

BO20003.complete Sequence

1114 bp assembled on 2009-05-13

GenBank Submission: KX795688

> BO20003.complete
GAAGTTATCAGTCGACATGTGGCTGAAATCCAAAACCAACCACCGCAAAA
CAAGCAGGCCAAAGAAACCACCGTTCACCTACACGGAGCTCATCGAATAC
GCCCTCGAGGATAAGGGTGAGCTGACTGTGTCGGGCATATACCAATGGAT
ATCCGATCGTTTCCCCTACTACAAGTCGAATGATGACCGCTGGAAGAACT
CCGTTCGACATAATCTATCGATTAACCCACATTTTCGGAAGGGAGTTAAA
GCGCCCCAAGGAGCCGGTCACCTGTGGGCCATTTCCAGCGGAGATTCCGC
CGAGAATGTTCTGGCCTGGGAGCATAAGAAGCAGCGGCTGGATTTGTTCT
TCAAAATGGAGTCGATTAACCGTGAGCGTATACAGCAGCATCAGCAACAG
CAGCAACTGCAGCAGCATCAGCAGCAACACCAGCAGCACTCGCCGCAACA
GAAACAACATTCGGCGGCACAGCAGCAACATATGCCACAGGCCAGTAGCT
GCATGTACGATGAGGCGGCGGTGGCAGTTGCTACTCTCACCCAGGAAATG
ATGCAGACTAACAGCGGCGGTGGCAGCACTGAGACAAGCCAGCAGCAGCA
GCAGCAGCAGCAGCATCACCACCACCACAGCCACCAGAATCACCAAAATC
ACAATCAACACCACCAAAGACTGCTGCCCTTCAACGATCTGTTGAGCGAC
GATGAGCTGCGAAAGACGGCGGGTCAAATACTGAATGGCATCCATCGCGA
GGTGGAAGTACAGTCGGTCAACTCTATCATCAGCACCTACCACGATGTCC
TGTTGGATAATGACTATTTGAATCCCATACACAAGGACGTGGTTGTTACG
GAAAGTGTCCTACGGCAGCAGCATGGCACCAACTTGGGCGGAGGCAATAA
CAACCAAAATAACCAAATGGGCGGCAATAGCCACATGGGTGGCGGCAACT
CGCAGTACTACATCACCGAAATTGATCCCATGGAGCTCGGCATTCAGATG
TCGCACCAAGTGGAGCCCTCCGAGGAGGAAGTACTCTTCAGCGACGAGTT
CAACCTTAACTACTTTGGCTATAATCCGGGTAGCGATATCGTCGCTGCAA
GCTTTCTAGACCAT

BO20003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-RC 2235 CG44123-PC 1194..2232 58..1096 5180 99.9 Plus
Crg-1-RB 345 CG32788-PB 1..137 17..153 685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-RC 3007 CG44123-RC 1435..2473 58..1096 5180 99.9 Plus
Crg-1-RB 1230 CG32788-RB 414..550 17..153 685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3809651..3810141 322..812 2425 99.6 Plus
X 23542271 X 3810222..3810506 812..1096 1425 100 Plus
X 23542271 X 3809422..3809593 154..325 860 100 Plus
X 23542271 X 3795092..3795228 17..153 685 100 Plus
X 23542271 X 3804185..3804321 17..153 685 100 Plus
Blast to na_te.dros performed 2014-11-27 12:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..7030 379..690 330 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2549 382..615 301 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2557 382..661 294 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2366..2666 382..667 288 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6975 402..675 275 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6764..7059 383..672 265 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..7027 383..666 259 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6815..6922 383..490 233 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2714..2998 375..660 219 59.6 Plus
roo 9092 roo DM_ROO 9092bp 1030..1113 353..438 200 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2994 424..671 193 57.9 Plus
roo 9092 roo DM_ROO 9092bp 1047..1156 397..513 181 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2572..2860 378..683 178 55.9 Plus

BO20003.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:22 Download gff for BO20003.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RB 1..1080 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:08 Download gff for BO20003.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1429..2473 51..1098 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:52 Download gff for BO20003.complete
Subject Subject Range Query Range Percent Splice Strand
fd3F-RC 1429..2473 51..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:52 Download gff for BO20003.complete
Subject Subject Range Query Range Percent Splice Strand
X 3809422..3809593 154..325 100 -> Plus
X 3804185..3804321 17..153 100 -> Plus
X 3809655..3810141 326..812 99 -> Plus
X 3810223..3810506 813..1098 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:08 Download gff for BO20003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3698218..3698354 17..153 100 -> Plus
arm_X 3703455..3703626 154..325 100 -> Plus
arm_X 3703688..3704174 326..812 99 -> Plus
arm_X 3704256..3704539 813..1098 99   Plus

BO20003.pep Sequence

Translation from 16 to 1114

> BO20003.pep
MWLKSKTNHRKTSRPKKPPFTYTELIEYALEDKGELTVSGIYQWISDRFP
YYKSNDDRWKNSVRHNLSINPHFRKGVKAPQGAGHLWAISSGDSAENVLA
WEHKKQRLDLFFKMESINRERIQQHQQQQQLQQHQQQHQQHSPQQKQHSA
AQQQHMPQASSCMYDEAAVAVATLTQEMMQTNSGGGSTETSQQQQQQQQH
HHHHSHQNHQNHNQHHQRLLPFNDLLSDDELRKTAGQILNGIHREVEVQS
VNSIISTYHDVLLDNDYLNPIHKDVVVTESVLRQQHGTNLGGGNNNQNNQ
MGGNSHMGGGNSQYYITEIDPMELGIQMSHQVEPSEEEVLFSDEFNLNYF
GYNPGSDIVAASFLDH

BO20003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
fd3F-PC 744 CG44123-PC 399..744 15..360 1861 100 Plus
Crg-1-PB 114 CG32788-PB 1..50 1..50 253 94 Plus
fkh-PD 510 CG10002-PD 200..412 7..210 229 29.8 Plus
fkh-PB 510 CG10002-PB 200..412 7..210 229 29.8 Plus
fd19B-PA 260 CG9571-PA 58..245 17..223 222 30.8 Plus