BO20003.complete Sequence
1114 bp assembled on 2009-05-13
GenBank Submission: KX795688
> BO20003.complete
GAAGTTATCAGTCGACATGTGGCTGAAATCCAAAACCAACCACCGCAAAA
CAAGCAGGCCAAAGAAACCACCGTTCACCTACACGGAGCTCATCGAATAC
GCCCTCGAGGATAAGGGTGAGCTGACTGTGTCGGGCATATACCAATGGAT
ATCCGATCGTTTCCCCTACTACAAGTCGAATGATGACCGCTGGAAGAACT
CCGTTCGACATAATCTATCGATTAACCCACATTTTCGGAAGGGAGTTAAA
GCGCCCCAAGGAGCCGGTCACCTGTGGGCCATTTCCAGCGGAGATTCCGC
CGAGAATGTTCTGGCCTGGGAGCATAAGAAGCAGCGGCTGGATTTGTTCT
TCAAAATGGAGTCGATTAACCGTGAGCGTATACAGCAGCATCAGCAACAG
CAGCAACTGCAGCAGCATCAGCAGCAACACCAGCAGCACTCGCCGCAACA
GAAACAACATTCGGCGGCACAGCAGCAACATATGCCACAGGCCAGTAGCT
GCATGTACGATGAGGCGGCGGTGGCAGTTGCTACTCTCACCCAGGAAATG
ATGCAGACTAACAGCGGCGGTGGCAGCACTGAGACAAGCCAGCAGCAGCA
GCAGCAGCAGCAGCATCACCACCACCACAGCCACCAGAATCACCAAAATC
ACAATCAACACCACCAAAGACTGCTGCCCTTCAACGATCTGTTGAGCGAC
GATGAGCTGCGAAAGACGGCGGGTCAAATACTGAATGGCATCCATCGCGA
GGTGGAAGTACAGTCGGTCAACTCTATCATCAGCACCTACCACGATGTCC
TGTTGGATAATGACTATTTGAATCCCATACACAAGGACGTGGTTGTTACG
GAAAGTGTCCTACGGCAGCAGCATGGCACCAACTTGGGCGGAGGCAATAA
CAACCAAAATAACCAAATGGGCGGCAATAGCCACATGGGTGGCGGCAACT
CGCAGTACTACATCACCGAAATTGATCCCATGGAGCTCGGCATTCAGATG
TCGCACCAAGTGGAGCCCTCCGAGGAGGAAGTACTCTTCAGCGACGAGTT
CAACCTTAACTACTTTGGCTATAATCCGGGTAGCGATATCGTCGCTGCAA
GCTTTCTAGACCAT
BO20003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd3F-RC | 2235 | CG44123-PC | 1194..2232 | 58..1096 | 5180 | 99.9 | Plus |
Crg-1-RB | 345 | CG32788-PB | 1..137 | 17..153 | 685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd3F-RC | 3007 | CG44123-RC | 1435..2473 | 58..1096 | 5180 | 99.9 | Plus |
Crg-1-RB | 1230 | CG32788-RB | 414..550 | 17..153 | 685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3809651..3810141 | 322..812 | 2425 | 99.6 | Plus |
X | 23542271 | X | 3810222..3810506 | 812..1096 | 1425 | 100 | Plus |
X | 23542271 | X | 3809422..3809593 | 154..325 | 860 | 100 | Plus |
X | 23542271 | X | 3795092..3795228 | 17..153 | 685 | 100 | Plus |
X | 23542271 | X | 3804185..3804321 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..7030 | 379..690 | 330 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2549 | 382..615 | 301 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2557 | 382..661 | 294 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2666 | 382..667 | 288 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6975 | 402..675 | 275 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..7059 | 383..672 | 265 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7027 | 383..666 | 259 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6922 | 383..490 | 233 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2714..2998 | 375..660 | 219 | 59.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1030..1113 | 353..438 | 200 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2994 | 424..671 | 193 | 57.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1047..1156 | 397..513 | 181 | 66.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2572..2860 | 378..683 | 178 | 55.9 | Plus |
BO20003.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:22 Download gff for
BO20003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd3F-RB | 1..1080 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:08 Download gff for
BO20003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd3F-RC | 1429..2473 | 51..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:52 Download gff for
BO20003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd3F-RC | 1429..2473 | 51..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:52 Download gff for
BO20003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3809422..3809593 | 154..325 | 100 | -> | Plus |
X | 3804185..3804321 | 17..153 | 100 | -> | Plus |
X | 3809655..3810141 | 326..812 | 99 | -> | Plus |
X | 3810223..3810506 | 813..1098 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:08 Download gff for
BO20003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3698218..3698354 | 17..153 | 100 | -> | Plus |
arm_X | 3703455..3703626 | 154..325 | 100 | -> | Plus |
arm_X | 3703688..3704174 | 326..812 | 99 | -> | Plus |
arm_X | 3704256..3704539 | 813..1098 | 99 | | Plus |
BO20003.pep Sequence
Translation from 16 to 1114
> BO20003.pep
MWLKSKTNHRKTSRPKKPPFTYTELIEYALEDKGELTVSGIYQWISDRFP
YYKSNDDRWKNSVRHNLSINPHFRKGVKAPQGAGHLWAISSGDSAENVLA
WEHKKQRLDLFFKMESINRERIQQHQQQQQLQQHQQQHQQHSPQQKQHSA
AQQQHMPQASSCMYDEAAVAVATLTQEMMQTNSGGGSTETSQQQQQQQQH
HHHHSHQNHQNHNQHHQRLLPFNDLLSDDELRKTAGQILNGIHREVEVQS
VNSIISTYHDVLLDNDYLNPIHKDVVVTESVLRQQHGTNLGGGNNNQNNQ
MGGNSHMGGGNSQYYITEIDPMELGIQMSHQVEPSEEEVLFSDEFNLNYF
GYNPGSDIVAASFLDH
BO20003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd3F-PC | 744 | CG44123-PC | 399..744 | 15..360 | 1861 | 100 | Plus |
Crg-1-PB | 114 | CG32788-PB | 1..50 | 1..50 | 253 | 94 | Plus |
fkh-PD | 510 | CG10002-PD | 200..412 | 7..210 | 229 | 29.8 | Plus |
fkh-PB | 510 | CG10002-PB | 200..412 | 7..210 | 229 | 29.8 | Plus |
fd19B-PA | 260 | CG9571-PA | 58..245 | 17..223 | 222 | 30.8 | Plus |