BO20005.complete Sequence
1480 bp assembled on 2009-07-17
GenBank Submission: KX800019
> BO20005.complete
GAAGTTATCAGTCGACATGATAAAGTCCACCACGAATCCACAGGAACAGC
GTCTGCCACGCCCCGAGGATCAGTCGCCAGCGCCGCCGCCGCCGCCCCCC
TCCTCAGCCACCACCTCCACCGCCGCCCCAGCCACGCCCACGCACCAAGT
GGCCACCGTGATAGCCAACATGGACACCCTGAAGACAGCCTTTCTGCCCA
ATCTCAGCATGGACCCCAATGTGCACGTGTCGCCGCACTATTGTCCCATG
TGTCACCAGCAGTTTGAGCGACCGCAGCACGTCGCGGATCACATGCAGCT
GTGCCACGGGATCACGCTGAACGCCCAGGGAGCCATTGCCACGCTGGACG
GCGGTCATCCGCAGGCACAGCAGCACCCCAAGCTCAGCCACCCCTGCTTC
AATTGTGATGAAAAGTTTGGCAACGCCGTCGATTTAGACGAACACCATCG
GCTGGCCCATCAGACGCCCGCCTTCCTGTCCCGCTGCCTTATGTGCAGCA
TCTATGGCATCCACTCGGCCACCCAGCAGCCCAACGAGTACAAATGCACG
CAGTGCGGCTCCATTTGCACCACCGCCATGCTGGCTGCCGGACAGCAGGG
CTTTATGGAACAGCAGGAGGCGGCGGTGACGCCCGACGATCAGCTGCCGG
CAATGGCGCCCCGTGATATGAGACTGACGCCCGAGGAGCAGCACCATCAG
CAGCAACTGCAGGCGGAGCACCACCATCAGCAACAGCACCAACAACAACA
ACAGCAGCAGCAGCAGCAGCAGGAACTGCTGGAGCAGCAGCAGCGTGAAA
TGCAGGAGCAGGCGCAACAGCAGCAGGTGCACCATCACCAGCAGGATCAG
GATCTCGCCGGCGACCAGGTGGCGCTGAAGGTGCCACCACTCACCGTCAA
GCTAAACAAGAACGCCAACGGTGGCGCCATTGTGTCGCATCCGCAGGTCA
TTATCAAGGAGGAGCCACTCAGCCTGAGCGACAGTGGTGATGTTGTCAAC
TCTGTGCCTGTCTATGCCATACAAGCCAATCCCGGTGTACCCGCTCCGGC
CAGTTCGGGTGTGCTAGTCGGCACACAAACGGTACCTGCCGATCTGGCGC
ACAAGATCCGGCACAAATGTCCGGATTGTCCAAAGACCTTCAAGACGCCC
GGCACGCTGGCCATGCACCGCAAGATACACACAGGCGAAGCAGACGCCAC
GCCCAAAGAACGCCCCTACACGTGCTCCTACTGCGGCAAGTCCTTCACTC
AATCGAATACACTAAAACAGCACACTCGCATACATACAGGAGAGAAGCCG
TTCCACTGCGGTTACTGCGAGAAGTCCTTCAGCGTGAAGGACTATCTGAC
CAAGCACATACGGACGCACACCGGCGAGAAGCCGTACACCTGTCCGTATT
GCGACAAGCGCTTCACGCAGCGCAGCGCCCTCACTGTGCACACGACCAAG
CTGCATCCGCTCGCAAGCTTTCTAGACCAT
BO20005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cf2-RE | 1449 | CG11924-PE | 1..1446 | 17..1462 | 7230 | 100 | Plus |
| Cf2-RB | 1449 | CG11924-PB | 1..1446 | 17..1462 | 7230 | 100 | Plus |
| Cf2-RC | 1449 | CG11924-PC | 1..1446 | 17..1462 | 7230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cf2-RE | 4231 | CG11924-RE | 653..2098 | 17..1462 | 7230 | 100 | Plus |
| Cf2-RB | 3679 | CG11924-RB | 320..1765 | 17..1462 | 7230 | 100 | Plus |
| Cf2-RC | 3703 | CG11924-RC | 344..1789 | 17..1462 | 7230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4881215..4882392 | 1194..17 | 5890 | 100 | Minus |
| 2L | 23513712 | 2L | 4879024..4879199 | 1462..1287 | 880 | 100 | Minus |
| 2L | 23513712 | 2L | 4880371..4880472 | 1296..1195 | 495 | 99 | Minus |
| X | 23542271 | X | 13649941..13650019 | 687..765 | 185 | 82.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:40:24 has no hits.
BO20005.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 12:13:27 Download gff for
BO20005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RB | 326..1771 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:56 Download gff for
BO20005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RC | 344..1789 | 17..1464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:04 Download gff for
BO20005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RC | 344..1789 | 17..1464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:04 Download gff for
BO20005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4879022..4879196 | 1290..1464 | 98 | <- | Minus |
| 2L | 4880378..4880472 | 1195..1289 | 100 | <- | Minus |
| 2L | 4881215..4882392 | 17..1194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:56 Download gff for
BO20005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4879022..4879196 | 1290..1464 | 98 | <- | Minus |
| arm_2L | 4880378..4880472 | 1195..1289 | 100 | <- | Minus |
| arm_2L | 4881215..4882392 | 17..1194 | 100 | | Minus |
BO20005.pep Sequence
Translation from 16 to 1480
> BO20005.pep
MIKSTTNPQEQRLPRPEDQSPAPPPPPPSSATTSTAAPATPTHQVATVIA
NMDTLKTAFLPNLSMDPNVHVSPHYCPMCHQQFERPQHVADHMQLCHGIT
LNAQGAIATLDGGHPQAQQHPKLSHPCFNCDEKFGNAVDLDEHHRLAHQT
PAFLSRCLMCSIYGIHSATQQPNEYKCTQCGSICTTAMLAAGQQGFMEQQ
EAAVTPDDQLPAMAPRDMRLTPEEQHHQQQLQAEHHHQQQHQQQQQQQQQ
QQELLEQQQREMQEQAQQQQVHHHQQDQDLAGDQVALKVPPLTVKLNKNA
NGGAIVSHPQVIIKEEPLSLSDSGDVVNSVPVYAIQANPGVPAPASSGVL
VGTQTVPADLAHKIRHKCPDCPKTFKTPGTLAMHRKIHTGEADATPKERP
YTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYCEKSFSVKDYLTKHIRT
HTGEKPYTCPYCDKRFTQRSALTVHTTKLHPLASFLDH
BO20005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cf2-PE | 482 | CG11924-PE | 1..482 | 1..482 | 2628 | 100 | Plus |
| Cf2-PB | 482 | CG11924-PB | 1..482 | 1..482 | 2628 | 100 | Plus |
| Cf2-PC | 482 | CG11924-PC | 1..482 | 1..482 | 2628 | 100 | Plus |
| Cf2-PA | 510 | CG11924-PA | 1..510 | 1..482 | 2589 | 94.5 | Plus |
| Cf2-PF | 431 | CG11924-PF | 1..431 | 52..482 | 2360 | 100 | Plus |
