BO20006.complete Sequence
1180 bp assembled on 2009-07-17
GenBank Submission: KX796634
> BO20006.complete
GAAGTTATCAGTCGACATGGCCAGTGTTTTCGATGAGTCTCATGAACCGG
GCCTATCCATTGCGTACATAATATACAAGTGCACCGGCTGGCAAGTTGAG
AAGCACGATCCACTGTCCAACACCATATGCAAGTCCTGTCTGGAGGATGC
GCAGAATGCATTCGATATCATAGAAACGTACGAGAGAAGTCACCAGTTTT
ACCGCTTCCTCAAGGATGTACGGGAGGAGGAGAGTGAAAATGATGGATCC
GGATGCTCAGAAGAAGTGGAGGCAGCTGAGAGGGATCTCCAGGATGGTGC
CGACGACGTCGATTCCGGCAATGAACCTGATATTAACGAATGTGATATCA
AGGCCAAGGAGAAACCAGGCTTTAGCTGTTCTCACTGCCCTAAATCTTTT
CAAGTAAAATCAAATCTGAAGGTACACATGCGTTCACACACAGGAGAACG
TCCCTTCACGTGTTCCCTCTGCCCCAAGTCCTTTGGCTATAGCTCTGGTC
TTCAGAATCACATGCGAACCCACACAGGAGAACGACCCTTCCAGTGCTCG
CATTGCCCAAGGTCCTTTACAGCTGGGCACCACCTCAAGGCCCACATACA
GATGCACGAAAGAAGAGGATCGTTAAGGTGCCCATACTGCCAAAAGTGCT
TTCTAACTTCTTTAATTCTCAAGCAGCATTTGGCCACGCACACTGATGAA
ACGCAGTTCAAGTGTTCCCAGTGCTCGAAGTCCTTTCAAGTCGAACATGA
ACTTTGGATGCACATGCGGGTGCACCAAGAACGCCTCTTTACTTGTGGCC
ATTGCTCAAAGGACTTTGCGCTACATGCGTATCTCAAGCGACACCTGTCA
AGGAACGCGAGATGCTCTCAAAGCTCAAAAGCATCTGCTCACAAAACACT
AGGCCACTCAAAGGCACTTAAGTGTGGTAAGTGCCCAAAAACTTTCACTG
ACCGTTCGGCTCTGTCCACTCACTTGAAATCACACACCAAAAATAAGCCA
TTGCTCGAAGGTCCTTGCAAATCTTCAGGATCTAAGCCGGCACATAGTAA
CGCACAAAGAAAACCGTTTAAGTGTTCCAGCTGCCCAAGGACTTTTTCGC
GGAAATCCGCACTGCTAACACACTTGCAAACCCACACAGGAAAACTGGGC
ACAAATCGCATGGCAAGCTTTCTAGACCAT
BO20006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neu2-RA | 1149 | CG7204-PA | 1..1146 | 17..1162 | 5715 | 99.9 | Plus |
| Neu2-RB | 927 | CG7204-PB | 1..910 | 17..926 | 4535 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neu2-RA | 1308 | CG7204-RA | 157..1302 | 17..1162 | 5715 | 99.9 | Plus |
| Neu2-RB | 1126 | CG7204-RB | 157..1066 | 17..926 | 4535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21488856..21490001 | 1162..17 | 5715 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:24 has no hits.
BO20006.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 12:13:28 Download gff for
BO20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neu2-RA | 1..1146 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:17 Download gff for
BO20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neu2-RA | 157..1302 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:24 Download gff for
BO20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neu2-RA | 157..1302 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:24 Download gff for
BO20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21488854..21490001 | 17..1164 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:17 Download gff for
BO20006.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21481954..21483101 | 17..1164 | 99 | | Minus |
BO20006.pep Sequence
Translation from 16 to 1180
> BO20006.pep
MASVFDESHEPGLSIAYIIYKCTGWQVEKHDPLSNTICKSCLEDAQNAFD
IIETYERSHQFYRFLKDVREEESENDGSGCSEEVEAAERDLQDGADDVDS
GNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCS
LCPKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAHIQMHERR
GSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHELWMHM
RVHQERLFTCGHCSKDFALHAYLKRHLSRNARCSQSSKASAHKTLGHSKA
LKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSNAQRKP
FKCSSCPRTFSRKSALLTHLQTHTGKLGTNRMASFLDH
BO20006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neu2-PA | 382 | CG7204-PA | 1..382 | 1..382 | 2100 | 100 | Plus |
| Neu2-PB | 308 | CG7204-PB | 1..303 | 1..303 | 1673 | 100 | Plus |
| CG15436-PA | 346 | CG15436-PA | 15..341 | 1..320 | 527 | 34 | Plus |
| CG5245-PA | 501 | CG5245-PA | 103..385 | 111..376 | 482 | 35.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 77..357 | 114..376 | 478 | 34.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 216..492 | 114..371 | 461 | 35.3 | Plus |
| crol-PG | 878 | CG14938-PG | 302..581 | 115..374 | 452 | 34.2 | Plus |
| CG5245-PA | 501 | CG5245-PA | 58..327 | 130..374 | 446 | 35.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 332..493 | 119..279 | 359 | 42.6 | Plus |
| CG15436-PA | 346 | CG15436-PA | 126..319 | 175..376 | 311 | 31.6 | Plus |
| CG5245-PA | 501 | CG5245-PA | 75..273 | 196..376 | 290 | 32.5 | Plus |
| Neu2-PB | 308 | CG7204-PB | 111..259 | 194..379 | 214 | 30.5 | Plus |
