BO20104.complete Sequence
1318 bp assembled on 2010-11-19
GenBank Submission: KX798629
> BO20104.complete
GAAGTTATCAGTCGACATGGCCGCTGTGAATGCTAGCAATGCGTTCGCCA
ATCTAACGGGACTGAGTGCGGCGGCGCTGCGAAACGTGAGTGCCGCCCAA
ACGACGGCGGTGGCGGCCGTCGCCAGCACAGTGGCCACCATCCAGCACCG
ACTGATGATCGGCAACCGGCAGAGTTTGCCGCCGGCGGGACCACCCAGCG
AAGGATCTAATGAGGATGGCGGTTTTCCCGGCGACGGCGACGACGACAGC
AGTGCGGCCAAGCGGCGCAGGTCGCGCACCAACTTCAACTCCTGGCAACT
GGAGGAGCTGGAGAGGGCCTTCTCCGCCAGCCACTATCCGGACATCTTCA
TGCGGGAGGCCCTGGCCATGCGGCTGGACCTCAAGGAGTCGCGAGTTGCG
GTATGGTTCCAGAATCGACGTGCCAAGGTGCGTAAGCGCGAGCACACGAA
GAAGGGACCCGGCCGCCCCGCCCACAACGCCCAGCCGCAGACCTGCAGCG
GTGAGCCCATTCCGCCCAACGAGCTCAAGGCCAAAGAGCGAGCCCGTCGT
CGAAAGAAGCTGGCCAAGGCCATCGACCGGCAGGCCCGGAAACTGCAGGC
CAAGGGCATCACCGTGGACCTGGAGGCCCTCAAGGCCGAGTACATATCAC
AGCACAAGGCGAACGGCACCTTCTCCGATTCGGACCTGGAGGACGATGGC
ATCCAGATCGACGTGGTGGGCGGCACGGACAGCGACGACGAGGGCGACAG
CGACGCCGTCAGTCCGGTGCGTCTCGGTGGCGGAGGAGGTGGTGGCGGTG
GCACTGGAGGCGGCGGAGGTGGTGGAGCCTCCTCGTCGCTCCACTGCGGA
CTGGATGGCGATGGCGACAGTTCGCGGGCGGGCAGCTTTATCGGCGGCGG
CGGTAGCCTGGGCAGCCCCAGTTCGGTGGCCCCACCCTCGATGCTCTCCA
ATGGAGCGGTCCAGTTCGGCAAGCTGGAGCCAATGGATGGCAATGAGTCC
GAGGAGCGGGACAGGGAGCGCGACTCGCCAAAGCCGCTCCTCTTTCCCGC
CAAGGCCTTCCATCAACTGAACCTGCAGAGCAGCCAACAGCACCACGGTC
TGGTGGTGGGCCAGGGTCAGGGATCGGGATCTGGACACGGGCACGGGCAC
CAGCACAACCACCATCAGCACCACCTTCATCATGGCAGTGCATCCGCCTC
GGCGGCGGCAGCAGTGGCCAATCTGGTGCACCAGACATCGCCGATCAGCA
TGCGCCGGAGCAATCCCTTCAGCATCGAGTCCTTGCTGTTCAACAACACG
GCAAGCTTTCTAGACCAT
BO20104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc-4-RC | 1767 | CG6269-PC | 481..1764 | 17..1300 | 6405 | 99.9 | Plus |
| unc-4-RB | 1767 | CG6269-PB | 481..1764 | 17..1300 | 6405 | 99.9 | Plus |
| unc-4-RD | 903 | CG6269-PD | 481..903 | 17..435 | 2005 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc-4-RC | 2995 | CG6269-RC | 843..2126 | 17..1300 | 6405 | 99.9 | Plus |
| unc-4-RB | 2866 | CG6269-RB | 843..2126 | 17..1300 | 6405 | 99.9 | Plus |
| unc-4-RD | 2870 | CG6269-RD | 843..2130 | 17..1300 | 6330 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17777079..17777839 | 540..1300 | 3805 | 100 | Plus |
| X | 23542271 | X | 17769411..17769617 | 17..223 | 1020 | 99.5 | Plus |
| X | 23542271 | X | 17776096..17776277 | 221..402 | 910 | 100 | Plus |
| X | 23542271 | X | 17776415..17776555 | 400..540 | 705 | 100 | Plus |
| X | 23542271 | X | 17813309..17813422 | 400..513 | 240 | 80.7 | Plus |
| X | 23542271 | X | 17811785..17811875 | 278..368 | 230 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:35:23 has no hits.
BO20104.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-19 09:48:53 Download gff for
BO20104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-4-RA | 29..1312 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:18 Download gff for
BO20104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-4-RB | 843..2126 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:16 Download gff for
BO20104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| unc-4-RB | 843..2126 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:16 Download gff for
BO20104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17769411..17769615 | 17..221 | 99 | -> | Plus |
| X | 17776097..17776275 | 222..400 | 100 | -> | Plus |
| X | 17776416..17776555 | 401..540 | 100 | -> | Plus |
| X | 17777080..17777839 | 541..1302 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:18 Download gff for
BO20104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17663444..17663648 | 17..221 | 99 | -> | Plus |
| arm_X | 17670130..17670308 | 222..400 | 100 | -> | Plus |
| arm_X | 17670449..17670588 | 401..540 | 100 | -> | Plus |
| arm_X | 17671113..17671872 | 541..1302 | 99 | | Plus |
BO20104.pep Sequence
Translation from 16 to 1318
> BO20104.pep
MAAVNASNAFANLTGLSAAALRNVSAAQTTAVAAVASTVATIQHRLMIGN
RQSLPPAGPPSEGSNEDGGFPGDGDDDSSAAKRRRSRTNFNSWQLEELER
AFSASHYPDIFMREALAMRLDLKESRVAVWFQNRRAKVRKREHTKKGPGR
PAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDRQARKLQAKGITV
DLEALKAEYISQHKANGTFSDSDLEDDGIQIDVVGGTDSDDEGDSDAVSP
VRLGGGGGGGGGTGGGGGGGASSSLHCGLDGDGDSSRAGSFIGGGGSLGS
PSSVAPPSMLSNGAVQFGKLEPMDGNESEERDRERDSPKPLLFPAKAFHQ
LNLQSSQQHHGLVVGQGQGSGSGHGHGHQHNHHQHHLHHGSASASAAAAV
ANLVHQTSPISMRRSNPFSIESLLFNNTASFLDH
BO20104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| unc-4-PC | 588 | CG6269-PC | 161..588 | 1..428 | 2222 | 100 | Plus |
| unc-4-PB | 588 | CG6269-PB | 161..588 | 1..428 | 2222 | 100 | Plus |
| unc-4-PD | 300 | CG6269-PD | 161..289 | 1..129 | 641 | 99.2 | Plus |
| OdsH-PA | 382 | CG6352-PA | 123..323 | 44..245 | 577 | 56.1 | Plus |
| al-PA | 408 | CG3935-PA | 35..175 | 33..168 | 257 | 42.7 | Plus |
