BO20203.complete Sequence
3250 bp assembled on 2010-11-05
GenBank Submission: KX795466
> BO20203.complete
GAAGTTATCAGTCGACATGGCGGTGATTAATAAAGCCGGAAATGTGATTG
CCCTCCTGCTGGTTAAGCTTCAGCTAATCCTGCTGTTCACGCTGTCAGTT
TCCGGAGAGTTGCCGCAGCTGGACTACGGCAGCTTGTCCGCATCCCTGGA
GGAGGATGCTATTGACCCACTCACGGCGATGGCACCCTTCGCCAACTCCC
TGGTCACCGAAGAATCGGCGCAGCACAAGAACAACGCCGAGCTGCTTGGC
AATAGCAGTGAGGATGAGAATGTGAGACCGCAGCAAGGGTCCTCTTCCTC
GGGACTAGGATCATCGGGAGCAGCAGGTGGATCAGGCATACTGCTCGAGG
AGTTTAACAGCGGCAAACTGAGTCCCGGAGAGGCGAGTAATACGCTGCCC
ATATTCCTCATCGAGCCGGAGAGCGTGTTCGTGGTCAAGAACCGGCCGGC
GGTGCTTAAGTGCAAGGCCTCCCACTCGCTGCAGGTGATCTTCAAGTGTA
GCGGCAGTTCGCAACCACCGCCGTCCACGCACGAAACTCACGTGGATCCG
CACACGGGGGTCAACATGGAGGAGGTCACCGCCACCATCCACCGCGACCT
GGTCGACGAGTTCTTCGGCGACGGACCCTTCAAGTGCGAGTGCCACGCGT
GGTCGTCGCGTGGCGTGGTCAAGAGTCAGGCGGCCACCGTGCACATTGCT
TATATTCGCAAGTCCTTCAACCAGTCGCCCACCTCGCTGCGCCTGGAGCT
GGGCAGTCGGGCGGAACTGCGCTGCGAACCACCCGGCGGTTTCCCCGAAC
CGAAGCTCACCTGGCACAAAAACAACGCGGTCATCACGGCGGACAGCGAG
CCGGGGATCACCGTTTCGGCCGGCACACTCATCTTCCGCCAGGTGGCCCT
GCAGCATATGGCCAACTATAGCTGCAGTGCGGAGAATATCGCTGGCAGAC
GCGTCTCCGATTCCGCCGTGCTCATCGTTTATGTCAACGGTGGCTGGAGC
ACCTGGAGTCCATGGCGCGAATGCAAGTGTGCGGGCAAGCCCAGCCAGGG
AAGGAAGCGTTCGCGCACCTGCAACAATCCGATGCCATTGAATGGGGGCG
CCCAGTGTCCGGGCCCCCAGATCCAGAAGTCCGCCGACTGCGCCGCATGT
CCAGAGGACACTCAAATCGTGAGCCCTGATGGATTTGACATTTCGTCGAG
TAAGCGCATGGCCCGCTGGTCGGCGTGGAGTGACTGGAGCATCTGCTCCG
CGGAGTGCATTCAAGTGCGTCGCCGGAAGTGCCTGACTCAGGGCCAGACT
CAGATTTCCTCCGAGGCGGAGGAAGCCGGTGATCTGCTCCTGGGAGCTCC
CGGAGTGGGCATGGCCGCCCTCATCGCCGCTGCAGGAGTGGGCGCAGTAG
GAAGCCCCAGCGAAGCGACTGGCTCCAGTTCCGACATTATCCCGGGATAT
GGCAAATCATTGTGCGCCGGAAAAGACATACAAACGGCCGAATGCCGCGG
CGAACAGTGCCAGATTGGCAAGGATGATTTCGATTGGACCCTCTATCTGG
GATTGGCCTTCATAACGGCGGTGTGCTTCGCCTTCGGGACCGCACTGATC
TGCTGCGCTCGCCGTGGCATCCGCACCAATCCCCATTACAACATGGCCCG
TTCAGTAATGGACGCGGATTATATGCCCGGCGTTGTGGAGAAGAAGGAGA
TGCGCATGCACATCGAGGCCAGCAACATGGGATACGATTACGTCAATCCC
GGACATCGTTATTTGCCCGGCGAGCACATCATGGGCATGGGCATCGGTTG
TGGAGGCGTCACCGAGCACCATTACGACGTGCCCAATCTGTCCGCCAACT
ACACTAATCCAATAGATCATCTAAGCGTGGACTATTTGTCAGAGACCGGG
GAATCCTCCACAGCTGATACATCGAACTCAACCTTCGATATGAACGGCAA
GCTGTCCATACTCAATGCCTCAAAGAGCAGCACATATGAGATGCTGGGAA
GCGCAGGAGGACAGCTCCGCCTCTATGGCGGCGAGCTGCTGCTCTTTGTC
CCGGAGCACGCCATTGGAAAGCACGTCAAGAAGCACGTATCCCTGCTGCT
GCTGAGCGACGAGTGCAGTCGCGTGTCCTGCGCCACCGAGAGCTCCATTC
TGTGCAGCAGTGTGGTTCATAGTGCCCCGCGGAACTACAGCTTCGTGAAA
CCAGTGATCCTGAAGATTCCCCACTGCCTGGTGGCTCCGGAGCAGTGGCA
TGTTCACATCTATCACGCGGACAGCGAACACGACGAGCTGAGTGTCAACT
GGAGGCGGGCAGTTTCTGTCGGCGAGGAAACCATCAACACACCCATGTTC
GTACAGCTGGAGGCGACGCATGTGTTCATTATGACTGAGCAACTGGGTCA
CTTCACCGTGGTGGCGGAGCCGAGGATTCAACAACCCTCGATCAAGATGA
AGCTGCTGGCCTTCAGTCAACATACACCACCCAGCAACGCAAATTGCAGT
TTGCGGATTTACGTGGTCAAGGACTTCCCCAATAGCAGGGATATCTGCGC
CAATGTGGAGGCCAAGCTGGGTGGCAGTTTTCTTGGCGAGAGCCAGGTCT
TTGCGTTTACCCTGAATAGCCGAAATCTAAACATCCGGGTGAGAAGCGCG
GATGTCGAGGCAGCAGCTCCCTACGAACATGCCATACCCTACCAGCACAT
CCTCAGCAACAACTCCATTCTGCACTGCGAGTTTAGCTTGAGGAGGCAGG
ATCAGAACAGCCTGTGCGTGGACTTTGGCCAGGGCAGCGAGGACGACTAC
TACACCTTTAACATTCCAGCGCACTCTATGAGCGGGTCGGCAGAGGAACT
GGCATCCACCACAAACACCACCATCTCAATTGACCGCCAGGGCAACTATG
TAAACGAAAGCTGTGTGATGGACTTCGTCCAGCTGCCGCACGCCACGAAG
CGTTTGATCTGCGGCGCCTTGGATCCTCCACGGGCGGACGAGCGGGATTG
GCGATTACTGGCCAAGAAGCTGAATACCGACCGATATATTGCGTACTTTG
CCACCAAAGCCTCGCCCACCGAACAGATCCTGAATCTGTGGGAGTGCCGA
GCGAATAGCAGTCCTGGTAGTAGTTCCAACTCAGTTTCACATACGATAAT
GGCACTCCTGCTGACGCTTAAGGAGATGGGACGTCAGGATGTGCTAGACA
TCATAGTTGAAACCATAGGCCCTTTGTGGATTGCAAGCTTTCTAGACCAT
BO20203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-5-RB | 3219 | CG8166-PB | 1..3216 | 17..3232 | 16080 | 100 | Plus |
unc-5-RA | 3219 | CG8166-PA | 1..3216 | 17..3232 | 16080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-5-RB | 5235 | CG8166-RB | 871..4087 | 16..3232 | 16085 | 100 | Plus |
unc-5-RA | 5033 | CG8166-RA | 669..3885 | 16..3232 | 16085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15365839..15367152 | 1919..3232 | 6555 | 99.9 | Plus |
2R | 25286936 | 2R | 15357027..15357712 | 16..701 | 3430 | 100 | Plus |
2R | 25286936 | 2R | 15361983..15362300 | 1209..1526 | 1590 | 100 | Plus |
2R | 25286936 | 2R | 15358009..15358290 | 702..983 | 1410 | 100 | Plus |
2R | 25286936 | 2R | 15364743..15364938 | 1653..1848 | 980 | 100 | Plus |
2R | 25286936 | 2R | 15358578..15358749 | 983..1154 | 860 | 100 | Plus |
2R | 25286936 | 2R | 15364512..15364641 | 1526..1655 | 650 | 100 | Plus |
2R | 25286936 | 2R | 15365711..15365784 | 1849..1922 | 370 | 100 | Plus |
2R | 25286936 | 2R | 15360412..15360468 | 1152..1208 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:33:00 has no hits.
BO20203.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-05 18:07:11 Download gff for
BO20203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-5-RA | 649..3864 | 17..3234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:45 Download gff for
BO20203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-5-RA | 670..3885 | 17..3234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:27 Download gff for
BO20203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-5-RA | 670..3885 | 17..3234 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:27 Download gff for
BO20203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15364513..15364641 | 1527..1655 | 100 | -> | Plus |
2R | 15364746..15364938 | 1656..1848 | 100 | -> | Plus |
2R | 15365711..15365784 | 1849..1922 | 100 | -> | Plus |
2R | 15361983..15362300 | 1209..1526 | 100 | -> | Plus |
2R | 15357028..15357712 | 17..701 | 100 | -> | Plus |
2R | 15358009..15358290 | 702..983 | 100 | -> | Plus |
2R | 15358579..15358749 | 984..1154 | 100 | -> | Plus |
2R | 15360415..15360468 | 1155..1208 | 100 | -> | Plus |
2R | 15365843..15367152 | 1923..3234 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:45 Download gff for
BO20203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11252018..11252146 | 1527..1655 | 100 | -> | Plus |
arm_2R | 11247920..11247973 | 1155..1208 | 100 | -> | Plus |
arm_2R | 11249488..11249805 | 1209..1526 | 100 | -> | Plus |
arm_2R | 11244533..11245217 | 17..701 | 100 | -> | Plus |
arm_2R | 11245514..11245795 | 702..983 | 100 | -> | Plus |
arm_2R | 11246084..11246254 | 984..1154 | 100 | -> | Plus |
arm_2R | 11252251..11252443 | 1656..1848 | 100 | -> | Plus |
arm_2R | 11253216..11253289 | 1849..1922 | 100 | -> | Plus |
arm_2R | 11253348..11254657 | 1923..3234 | 99 | | Plus |
BO20203.pep Sequence
Translation from 16 to 3250
> BO20203.pep
MAVINKAGNVIALLLVKLQLILLFTLSVSGELPQLDYGSLSASLEEDAID
PLTAMAPFANSLVTEESAQHKNNAELLGNSSEDENVRPQQGSSSSGLGSS
GAAGGSGILLEEFNSGKLSPGEASNTLPIFLIEPESVFVVKNRPAVLKCK
ASHSLQVIFKCSGSSQPPPSTHETHVDPHTGVNMEEVTATIHRDLVDEFF
GDGPFKCECHAWSSRGVVKSQAATVHIAYIRKSFNQSPTSLRLELGSRAE
LRCEPPGGFPEPKLTWHKNNAVITADSEPGITVSAGTLIFRQVALQHMAN
YSCSAENIAGRRVSDSAVLIVYVNGGWSTWSPWRECKCAGKPSQGRKRSR
TCNNPMPLNGGAQCPGPQIQKSADCAACPEDTQIVSPDGFDISSSKRMAR
WSAWSDWSICSAECIQVRRRKCLTQGQTQISSEAEEAGDLLLGAPGVGMA
ALIAAAGVGAVGSPSEATGSSSDIIPGYGKSLCAGKDIQTAECRGEQCQI
GKDDFDWTLYLGLAFITAVCFAFGTALICCARRGIRTNPHYNMARSVMDA
DYMPGVVEKKEMRMHIEASNMGYDYVNPGHRYLPGEHIMGMGIGCGGVTE
HHYDVPNLSANYTNPIDHLSVDYLSETGESSTADTSNSTFDMNGKLSILN
ASKSSTYEMLGSAGGQLRLYGGELLLFVPEHAIGKHVKKHVSLLLLSDEC
SRVSCATESSILCSSVVHSAPRNYSFVKPVILKIPHCLVAPEQWHVHIYH
ADSEHDELSVNWRRAVSVGEETINTPMFVQLEATHVFIMTEQLGHFTVVA
EPRIQQPSIKMKLLAFSQHTPPSNANCSLRIYVVKDFPNSRDICANVEAK
LGGSFLGESQVFAFTLNSRNLNIRVRSADVEAAAPYEHAIPYQHILSNNS
ILHCEFSLRRQDQNSLCVDFGQGSEDDYYTFNIPAHSMSGSAEELASTTN
TTISIDRQGNYVNESCVMDFVQLPHATKRLICGALDPPRADERDWRLLAK
KLNTDRYIAYFATKASPTEQILNLWECRANSSPGSSSNSVSHTIMALLLT
LKEMGRQDVLDIIVETIGPLWIASFLDH
BO20203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-5-PB | 1072 | CG8166-PB | 1..1072 | 1..1072 | 5628 | 100 | Plus |
unc-5-PA | 1072 | CG8166-PA | 1..1072 | 1..1072 | 5628 | 100 | Plus |
Sema-5c-PB | 1091 | CG5661-PB | 545..736 | 318..511 | 196 | 29.4 | Plus |
Sema-5c-PA | 1093 | CG5661-PA | 547..738 | 318..511 | 196 | 29.4 | Plus |
robo-PC | 1395 | CG13521-PC | 56..253 | 128..323 | 178 | 29.1 | Plus |