Clone BO20203 Report

Search the DGRC for BO20203

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:202
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptunc-5-RA
Protein status:BO20203.pep: Imported from assembly
Sequenced Size:3250

Clone Sequence Records

BO20203.complete Sequence

3250 bp assembled on 2010-11-05

GenBank Submission: KX795466

> BO20203.complete
GAAGTTATCAGTCGACATGGCGGTGATTAATAAAGCCGGAAATGTGATTG
CCCTCCTGCTGGTTAAGCTTCAGCTAATCCTGCTGTTCACGCTGTCAGTT
TCCGGAGAGTTGCCGCAGCTGGACTACGGCAGCTTGTCCGCATCCCTGGA
GGAGGATGCTATTGACCCACTCACGGCGATGGCACCCTTCGCCAACTCCC
TGGTCACCGAAGAATCGGCGCAGCACAAGAACAACGCCGAGCTGCTTGGC
AATAGCAGTGAGGATGAGAATGTGAGACCGCAGCAAGGGTCCTCTTCCTC
GGGACTAGGATCATCGGGAGCAGCAGGTGGATCAGGCATACTGCTCGAGG
AGTTTAACAGCGGCAAACTGAGTCCCGGAGAGGCGAGTAATACGCTGCCC
ATATTCCTCATCGAGCCGGAGAGCGTGTTCGTGGTCAAGAACCGGCCGGC
GGTGCTTAAGTGCAAGGCCTCCCACTCGCTGCAGGTGATCTTCAAGTGTA
GCGGCAGTTCGCAACCACCGCCGTCCACGCACGAAACTCACGTGGATCCG
CACACGGGGGTCAACATGGAGGAGGTCACCGCCACCATCCACCGCGACCT
GGTCGACGAGTTCTTCGGCGACGGACCCTTCAAGTGCGAGTGCCACGCGT
GGTCGTCGCGTGGCGTGGTCAAGAGTCAGGCGGCCACCGTGCACATTGCT
TATATTCGCAAGTCCTTCAACCAGTCGCCCACCTCGCTGCGCCTGGAGCT
GGGCAGTCGGGCGGAACTGCGCTGCGAACCACCCGGCGGTTTCCCCGAAC
CGAAGCTCACCTGGCACAAAAACAACGCGGTCATCACGGCGGACAGCGAG
CCGGGGATCACCGTTTCGGCCGGCACACTCATCTTCCGCCAGGTGGCCCT
GCAGCATATGGCCAACTATAGCTGCAGTGCGGAGAATATCGCTGGCAGAC
GCGTCTCCGATTCCGCCGTGCTCATCGTTTATGTCAACGGTGGCTGGAGC
ACCTGGAGTCCATGGCGCGAATGCAAGTGTGCGGGCAAGCCCAGCCAGGG
AAGGAAGCGTTCGCGCACCTGCAACAATCCGATGCCATTGAATGGGGGCG
CCCAGTGTCCGGGCCCCCAGATCCAGAAGTCCGCCGACTGCGCCGCATGT
CCAGAGGACACTCAAATCGTGAGCCCTGATGGATTTGACATTTCGTCGAG
TAAGCGCATGGCCCGCTGGTCGGCGTGGAGTGACTGGAGCATCTGCTCCG
CGGAGTGCATTCAAGTGCGTCGCCGGAAGTGCCTGACTCAGGGCCAGACT
CAGATTTCCTCCGAGGCGGAGGAAGCCGGTGATCTGCTCCTGGGAGCTCC
CGGAGTGGGCATGGCCGCCCTCATCGCCGCTGCAGGAGTGGGCGCAGTAG
GAAGCCCCAGCGAAGCGACTGGCTCCAGTTCCGACATTATCCCGGGATAT
GGCAAATCATTGTGCGCCGGAAAAGACATACAAACGGCCGAATGCCGCGG
CGAACAGTGCCAGATTGGCAAGGATGATTTCGATTGGACCCTCTATCTGG
GATTGGCCTTCATAACGGCGGTGTGCTTCGCCTTCGGGACCGCACTGATC
TGCTGCGCTCGCCGTGGCATCCGCACCAATCCCCATTACAACATGGCCCG
TTCAGTAATGGACGCGGATTATATGCCCGGCGTTGTGGAGAAGAAGGAGA
TGCGCATGCACATCGAGGCCAGCAACATGGGATACGATTACGTCAATCCC
GGACATCGTTATTTGCCCGGCGAGCACATCATGGGCATGGGCATCGGTTG
TGGAGGCGTCACCGAGCACCATTACGACGTGCCCAATCTGTCCGCCAACT
ACACTAATCCAATAGATCATCTAAGCGTGGACTATTTGTCAGAGACCGGG
GAATCCTCCACAGCTGATACATCGAACTCAACCTTCGATATGAACGGCAA
GCTGTCCATACTCAATGCCTCAAAGAGCAGCACATATGAGATGCTGGGAA
GCGCAGGAGGACAGCTCCGCCTCTATGGCGGCGAGCTGCTGCTCTTTGTC
CCGGAGCACGCCATTGGAAAGCACGTCAAGAAGCACGTATCCCTGCTGCT
GCTGAGCGACGAGTGCAGTCGCGTGTCCTGCGCCACCGAGAGCTCCATTC
TGTGCAGCAGTGTGGTTCATAGTGCCCCGCGGAACTACAGCTTCGTGAAA
CCAGTGATCCTGAAGATTCCCCACTGCCTGGTGGCTCCGGAGCAGTGGCA
TGTTCACATCTATCACGCGGACAGCGAACACGACGAGCTGAGTGTCAACT
GGAGGCGGGCAGTTTCTGTCGGCGAGGAAACCATCAACACACCCATGTTC
GTACAGCTGGAGGCGACGCATGTGTTCATTATGACTGAGCAACTGGGTCA
CTTCACCGTGGTGGCGGAGCCGAGGATTCAACAACCCTCGATCAAGATGA
AGCTGCTGGCCTTCAGTCAACATACACCACCCAGCAACGCAAATTGCAGT
TTGCGGATTTACGTGGTCAAGGACTTCCCCAATAGCAGGGATATCTGCGC
CAATGTGGAGGCCAAGCTGGGTGGCAGTTTTCTTGGCGAGAGCCAGGTCT
TTGCGTTTACCCTGAATAGCCGAAATCTAAACATCCGGGTGAGAAGCGCG
GATGTCGAGGCAGCAGCTCCCTACGAACATGCCATACCCTACCAGCACAT
CCTCAGCAACAACTCCATTCTGCACTGCGAGTTTAGCTTGAGGAGGCAGG
ATCAGAACAGCCTGTGCGTGGACTTTGGCCAGGGCAGCGAGGACGACTAC
TACACCTTTAACATTCCAGCGCACTCTATGAGCGGGTCGGCAGAGGAACT
GGCATCCACCACAAACACCACCATCTCAATTGACCGCCAGGGCAACTATG
TAAACGAAAGCTGTGTGATGGACTTCGTCCAGCTGCCGCACGCCACGAAG
CGTTTGATCTGCGGCGCCTTGGATCCTCCACGGGCGGACGAGCGGGATTG
GCGATTACTGGCCAAGAAGCTGAATACCGACCGATATATTGCGTACTTTG
CCACCAAAGCCTCGCCCACCGAACAGATCCTGAATCTGTGGGAGTGCCGA
GCGAATAGCAGTCCTGGTAGTAGTTCCAACTCAGTTTCACATACGATAAT
GGCACTCCTGCTGACGCTTAAGGAGATGGGACGTCAGGATGTGCTAGACA
TCATAGTTGAAACCATAGGCCCTTTGTGGATTGCAAGCTTTCTAGACCAT

BO20203.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
unc-5-RB 3219 CG8166-PB 1..3216 17..3232 16080 100 Plus
unc-5-RA 3219 CG8166-PA 1..3216 17..3232 16080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
unc-5-RB 5235 CG8166-RB 871..4087 16..3232 16085 100 Plus
unc-5-RA 5033 CG8166-RA 669..3885 16..3232 16085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15365839..15367152 1919..3232 6555 99.9 Plus
2R 25286936 2R 15357027..15357712 16..701 3430 100 Plus
2R 25286936 2R 15361983..15362300 1209..1526 1590 100 Plus
2R 25286936 2R 15358009..15358290 702..983 1410 100 Plus
2R 25286936 2R 15364743..15364938 1653..1848 980 100 Plus
2R 25286936 2R 15358578..15358749 983..1154 860 100 Plus
2R 25286936 2R 15364512..15364641 1526..1655 650 100 Plus
2R 25286936 2R 15365711..15365784 1849..1922 370 100 Plus
2R 25286936 2R 15360412..15360468 1152..1208 285 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:33:00 has no hits.

BO20203.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-05 18:07:11 Download gff for BO20203.complete
Subject Subject Range Query Range Percent Splice Strand
unc-5-RA 649..3864 17..3234 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:45 Download gff for BO20203.complete
Subject Subject Range Query Range Percent Splice Strand
unc-5-RA 670..3885 17..3234 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:27 Download gff for BO20203.complete
Subject Subject Range Query Range Percent Splice Strand
unc-5-RA 670..3885 17..3234 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:27 Download gff for BO20203.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15364513..15364641 1527..1655 100 -> Plus
2R 15364746..15364938 1656..1848 100 -> Plus
2R 15365711..15365784 1849..1922 100 -> Plus
2R 15361983..15362300 1209..1526 100 -> Plus
2R 15357028..15357712 17..701 100 -> Plus
2R 15358009..15358290 702..983 100 -> Plus
2R 15358579..15358749 984..1154 100 -> Plus
2R 15360415..15360468 1155..1208 100 -> Plus
2R 15365843..15367152 1923..3234 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:45 Download gff for BO20203.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11252018..11252146 1527..1655 100 -> Plus
arm_2R 11247920..11247973 1155..1208 100 -> Plus
arm_2R 11249488..11249805 1209..1526 100 -> Plus
arm_2R 11244533..11245217 17..701 100 -> Plus
arm_2R 11245514..11245795 702..983 100 -> Plus
arm_2R 11246084..11246254 984..1154 100 -> Plus
arm_2R 11252251..11252443 1656..1848 100 -> Plus
arm_2R 11253216..11253289 1849..1922 100 -> Plus
arm_2R 11253348..11254657 1923..3234 99   Plus

BO20203.pep Sequence

Translation from 16 to 3250

> BO20203.pep
MAVINKAGNVIALLLVKLQLILLFTLSVSGELPQLDYGSLSASLEEDAID
PLTAMAPFANSLVTEESAQHKNNAELLGNSSEDENVRPQQGSSSSGLGSS
GAAGGSGILLEEFNSGKLSPGEASNTLPIFLIEPESVFVVKNRPAVLKCK
ASHSLQVIFKCSGSSQPPPSTHETHVDPHTGVNMEEVTATIHRDLVDEFF
GDGPFKCECHAWSSRGVVKSQAATVHIAYIRKSFNQSPTSLRLELGSRAE
LRCEPPGGFPEPKLTWHKNNAVITADSEPGITVSAGTLIFRQVALQHMAN
YSCSAENIAGRRVSDSAVLIVYVNGGWSTWSPWRECKCAGKPSQGRKRSR
TCNNPMPLNGGAQCPGPQIQKSADCAACPEDTQIVSPDGFDISSSKRMAR
WSAWSDWSICSAECIQVRRRKCLTQGQTQISSEAEEAGDLLLGAPGVGMA
ALIAAAGVGAVGSPSEATGSSSDIIPGYGKSLCAGKDIQTAECRGEQCQI
GKDDFDWTLYLGLAFITAVCFAFGTALICCARRGIRTNPHYNMARSVMDA
DYMPGVVEKKEMRMHIEASNMGYDYVNPGHRYLPGEHIMGMGIGCGGVTE
HHYDVPNLSANYTNPIDHLSVDYLSETGESSTADTSNSTFDMNGKLSILN
ASKSSTYEMLGSAGGQLRLYGGELLLFVPEHAIGKHVKKHVSLLLLSDEC
SRVSCATESSILCSSVVHSAPRNYSFVKPVILKIPHCLVAPEQWHVHIYH
ADSEHDELSVNWRRAVSVGEETINTPMFVQLEATHVFIMTEQLGHFTVVA
EPRIQQPSIKMKLLAFSQHTPPSNANCSLRIYVVKDFPNSRDICANVEAK
LGGSFLGESQVFAFTLNSRNLNIRVRSADVEAAAPYEHAIPYQHILSNNS
ILHCEFSLRRQDQNSLCVDFGQGSEDDYYTFNIPAHSMSGSAEELASTTN
TTISIDRQGNYVNESCVMDFVQLPHATKRLICGALDPPRADERDWRLLAK
KLNTDRYIAYFATKASPTEQILNLWECRANSSPGSSSNSVSHTIMALLLT
LKEMGRQDVLDIIVETIGPLWIASFLDH

BO20203.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
unc-5-PB 1072 CG8166-PB 1..1072 1..1072 5628 100 Plus
unc-5-PA 1072 CG8166-PA 1..1072 1..1072 5628 100 Plus
Sema-5c-PB 1091 CG5661-PB 545..736 318..511 196 29.4 Plus
Sema-5c-PA 1093 CG5661-PA 547..738 318..511 196 29.4 Plus
robo-PC 1395 CG13521-PC 56..253 128..323 178 29.1 Plus