BO20218.complete Sequence
967 bp assembled on 2009-05-13
GenBank Submission: KX795942
> BO20218.complete
GAAGTTATCAGTCGACATGGATAACAAGTCAGCCGTATCTGCTCTACAGG
AGTTTTGTGCCCGGACACAGATTAATCTACCAACATACAGTTTTATTCCC
GGCGAAGACGGAGGGTACGTCTGTAAAGTTGAACTATTGGAGATAGAGGC
CCTTGGAAATGGGCGTTCGAAGCGTGATGCCAAACACCTGGCTGCCAGCA
ATATCTTGCGTAAAATCCAACTGCTGCCCGGCATACACGGCTTGATGAAG
GATTCGACTGTGGGTGATCTGGATGAGGAACTGACTAACCTCAACCGGGA
CATGGTGAAGGAGCTGCGTGACTACTGCGTCCGCCGCGAGATGCCACTGC
CCTGCATTGAGGTAGTGCAGCAAAGCGGCACCCCGAGCGCCCCGGAATTC
GTGGCCTGTTGCTCCGTGGCCTCCATAGTACGCTACGGAAAGTCGGACAA
AAAGAAGGATGCCCGTCAGCGAGCGGCCATTGAAATGCTGGCCTTAATCT
CCAGCAATTCGGACAATTTGCGTCCGGATCAAATGCAAGTAGCGAGCACA
AGCAAATTGAAAGTTGTTGATATGGAAGAATCTATGGAGGAATTGGAGGC
ATTGCGCAGAAAGAAATTTACCACCTACTGGGAGTTGAAGGAAGCCGGGA
GCGTAGACCATACAGGCATGCGGCTCTGCGACCGACACAACTACTTCAAG
AACTTCTATCCTACCCTGAAAAAGGAGGCCATTGAGGCCATCAATTCAGA
TGAATACGAGAGCTCCAAGGATAAGGCTATGGACGTAATGAGCTCTTTAA
AGATAACACCCAAAATCAGTGAAGTGGAATCTTCATCGTTGGTTCCCTTG
CTTAGCGTCGAGCTTAATTGTGCATTCGACGTGGTCCTTATGGCAAAGGA
GACCGATATCTACGACCATATAATAGACTATTTTCGCACCATGTTGATTG
CAAGCTTTCTAGACCAT
BO20218.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r2d2-RC | 936 | CG7138-PC | 1..933 | 17..949 | 4665 | 100 | Plus |
| r2d2-RB | 936 | CG7138-PB | 1..933 | 17..949 | 4665 | 100 | Plus |
| r2d2-RA | 936 | CG7138-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r2d2-RC | 1356 | CG7138-RC | 356..1289 | 16..949 | 4670 | 100 | Plus |
| r2d2-RB | 1121 | CG7138-RB | 121..1054 | 16..949 | 4670 | 100 | Plus |
| r2d2-RA | 1786 | CG7138-RA | 263..1196 | 16..949 | 4670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7800720..7801508 | 161..949 | 3945 | 100 | Plus |
| 2L | 23513712 | 2L | 7800502..7800648 | 16..162 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:59:31 has no hits.
BO20218.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:51 Download gff for
BO20218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r2d2-RA | 222..1154 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:48 Download gff for
BO20218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r2d2-RA | 264..1196 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:37 Download gff for
BO20218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| r2d2-RA | 264..1196 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:37 Download gff for
BO20218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7800503..7800647 | 17..161 | 100 | -> | Plus |
| 2L | 7800721..7801508 | 162..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:48 Download gff for
BO20218.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7800503..7800647 | 17..161 | 100 | -> | Plus |
| arm_2L | 7800721..7801508 | 162..951 | 99 | | Plus |
BO20218.pep Sequence
Translation from 16 to 967
> BO20218.pep
MDNKSAVSALQEFCARTQINLPTYSFIPGEDGGYVCKVELLEIEALGNGR
SKRDAKHLAASNILRKIQLLPGIHGLMKDSTVGDLDEELTNLNRDMVKEL
RDYCVRREMPLPCIEVVQQSGTPSAPEFVACCSVASIVRYGKSDKKKDAR
QRAAIEMLALISSNSDNLRPDQMQVASTSKLKVVDMEESMEELEALRRKK
FTTYWELKEAGSVDHTGMRLCDRHNYFKNFYPTLKKEAIEAINSDEYESS
KDKAMDVMSSLKITPKISEVESSSLVPLLSVELNCAFDVVLMAKETDIYD
HIIDYFRTMLIASFLDH
BO20218.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| r2d2-PC | 311 | CG7138-PC | 1..311 | 1..311 | 1584 | 100 | Plus |
| r2d2-PB | 311 | CG7138-PB | 1..311 | 1..311 | 1584 | 100 | Plus |
| r2d2-PA | 311 | CG7138-PA | 1..311 | 1..311 | 1584 | 100 | Plus |
