BO20225.complete Sequence
1297 bp assembled on 2009-05-13
GenBank Submission: KX795900
> BO20225.complete
GAAGTTATCAGTCGACATGAGGTCATCATCGTGCCAGCTGGTGACTCTGG
GCGTTCTGCTGGCCATCTGTTCCCTGGGTCAGGGACAATTCAAGACGGCT
GGCATCAAGACACGGCAGCCGCCATCGGGAAACCTGCAGCTTGCCGGCAA
TAGCAGTGAGTCGGGATGGAGGAGCTACAACCAGAGCAGCTACGGTTGGA
GCACTCAAAACCAGAGCAACTACGCCTGGAACCAGCAGAACCATGTGGAA
CAGGGATCCGCTGGATTTGTGCGCGCCGAGGTCTTTCAACCGGTCACATT
GCCGCCCCTTTATGGACACTACGTGCAGCCGGTGACTCCGCCCGCTCATC
GTGTCCAGGTCCTGGATGAAACGGCCCTGTTCATCAACAAAACCAGATCT
GCCATGGCCAGTGGTGTGTGCTACAAGGAAGTTCCAACCGCGTCACTGCT
CCGCAATTCGCGGGATCAGTTCGTTGGCAATGGCACCACTCCGGACATGA
GTCGCATCCAAGTCTGCTGCGATGGCTATGAGCGAAATCCGCACATCTAC
CGCCGCTGTGAGCCGATCTGCGCGGATGACTGCCGGAATGGAATATGCAC
TGCTCCGAATACCTGTGTCTGCATACCCGGCCACGTTCGCACCGCCGAGG
GCAAGTGCATCTCCACCTGTCCCCTGGGCTGCGGCAACGGAGTGTGCGAC
GAGCGGAATGAGTGCAAGTGCCGCGAGGGATACTCGCTTGAGCCGGAGAC
TCGTAAGTACTGCCAGCCGGAATGCAAGCCCGGCTGCTCCTTTGGACGCT
GTGTGGCGCCCAACAAGTGCGCCTGCCTCGACGGATACCGCCTGGCCGCC
GATGGATCCTGCGAACCAGTGTGCGACAGTTGCGAGAATGGCAAGTGCAC
GGCTCCAGGACACTGCAACTGCAACGCAGGCTACCTAAAGCTCCAAGGAC
GCTGCGAACCCATTTGCTCCATACCCTGCAAGAACGGACGCTGCATTGGA
CCGGACATCTGTGAGTGCGCTTCCGGTTTCGAGTGGGACCGGAAGTCGGC
CGAGTGTCTGCCGAAGTGTGACCTTCCGTGCTTGAACGGCGTCTGTGTGG
GCAACAACCAGTGCGACTGCAAGACCGGATATGTGAGGGACGAGCACCAG
CGGAACATCTGCCAGCCACACTGCCCGCAGGGATGCCAGAACGGTTACTG
CAGTGCCCCAAACTTCTGCATCTGCAGGCCGGGATTCATCAAGAGCGGCA
TCAAGGGACGCCAGACCTGCCAGGCCGTCGCAAGCTTTCTAGACCAT
BO20225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB2-RA | 1266 | CG31839-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB2-RA | 1435 | CG31839-RA | 94..1357 | 16..1279 | 6320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13965475..13966011 | 972..436 | 2685 | 100 | Minus |
| 2L | 23513712 | 2L | 13966506..13966925 | 435..16 | 2100 | 100 | Minus |
| 2L | 23513712 | 2L | 13965090..13965396 | 1279..973 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:56:15 has no hits.
BO20225.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:50 Download gff for
BO20225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimB2-RA | 99..1361 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:47 Download gff for
BO20225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB2-RA | 95..1357 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:26 Download gff for
BO20225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimB2-RA | 95..1357 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:26 Download gff for
BO20225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13965088..13965396 | 973..1281 | 99 | <- | Minus |
| 2L | 13965475..13966011 | 436..972 | 100 | <- | Minus |
| 2L | 13966506..13966924 | 17..435 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:47 Download gff for
BO20225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13965088..13965396 | 973..1281 | 99 | <- | Minus |
| arm_2L | 13965475..13966011 | 436..972 | 100 | <- | Minus |
| arm_2L | 13966506..13966924 | 17..435 | 100 | | Minus |
BO20225.pep Sequence
Translation from 16 to 1297
> BO20225.pep
MRSSSCQLVTLGVLLAICSLGQGQFKTAGIKTRQPPSGNLQLAGNSSESG
WRSYNQSSYGWSTQNQSNYAWNQQNHVEQGSAGFVRAEVFQPVTLPPLYG
HYVQPVTPPAHRVQVLDETALFINKTRSAMASGVCYKEVPTASLLRNSRD
QFVGNGTTPDMSRIQVCCDGYERNPHIYRRCEPICADDCRNGICTAPNTC
VCIPGHVRTAEGKCISTCPLGCGNGVCDERNECKCREGYSLEPETRKYCQ
PECKPGCSFGRCVAPNKCACLDGYRLAADGSCEPVCDSCENGKCTAPGHC
NCNAGYLKLQGRCEPICSIPCKNGRCIGPDICECASGFEWDRKSAECLPK
CDLPCLNGVCVGNNQCDCKTGYVRDEHQRNICQPHCPQGCQNGYCSAPNF
CICRPGFIKSGIKGRQTCQAVASFLDH
BO20225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimB2-PA | 421 | CG31839-PA | 1..421 | 1..421 | 2409 | 100 | Plus |
| eater-PC | 1074 | CG6124-PC | 217..451 | 167..407 | 606 | 43.6 | Plus |
| eater-PC | 1074 | CG6124-PC | 546..794 | 167..423 | 597 | 42.1 | Plus |
| eater-PC | 1074 | CG6124-PC | 381..618 | 167..409 | 592 | 42.4 | Plus |
| eater-PC | 1074 | CG6124-PC | 579..814 | 167..407 | 589 | 42 | Plus |
| eater-PC | 1074 | CG6124-PC | 240..530 | 154..423 | 579 | 37.3 | Plus |
| eater-PC | 1074 | CG6124-PC | 145..398 | 167..423 | 571 | 41.1 | Plus |
| NimB1-PA | 402 | CG33119-PA | 58..337 | 134..406 | 568 | 40 | Plus |
| NimB1-PB | 403 | CG33119-PB | 58..338 | 134..406 | 556 | 39.5 | Plus |
| NimB4-PA | 448 | CG33115-PA | 92..367 | 135..403 | 543 | 38.2 | Plus |
| eater-PC | 1074 | CG6124-PC | 744..1006 | 167..423 | 528 | 39.9 | Plus |
| eater-PC | 1074 | CG6124-PC | 41..197 | 270..419 | 268 | 35.2 | Plus |
| NimB1-PA | 402 | CG33119-PA | 198..365 | 167..313 | 262 | 31.7 | Plus |
| NimB1-PA | 402 | CG33119-PA | 91..269 | 235..407 | 261 | 31 | Plus |
| NimB1-PB | 403 | CG33119-PB | 91..269 | 235..407 | 261 | 31 | Plus |
| NimB1-PA | 402 | CG33119-PA | 91..237 | 270..409 | 255 | 39.6 | Plus |
| NimB1-PB | 403 | CG33119-PB | 91..237 | 270..409 | 255 | 39.6 | Plus |
| NimB1-PA | 402 | CG33119-PA | 91..215 | 302..423 | 200 | 34.9 | Plus |
| NimB1-PB | 403 | CG33119-PB | 91..215 | 302..423 | 200 | 34.9 | Plus |
