BO20233.complete Sequence
1606 bp assembled on 2009-05-13
GenBank Submission: KX799758
> BO20233.complete
GAAGTTATCAGTCGACATGGAGTGGTCGCTCATCATATCGATTCTGCTCA
ACTGCCTCTACGCCAGCGCCTCCGCGCTCGACGAGGATTGCCCCACCTTG
GACGATGGGGACAGTTTGTCGCAAACACAGCTGCTGGATCGCTTAACCCA
TGGCTGCCGCTACGATCGTTTGGAACGACCCATAACTTATTCGGAAACTG
GCCAGCGGCTACCGGTGGACGTCTATATGCGCGCCTACATCTACTTCATG
CAGAACCTGGAAGCACACGATCTACAGTTCAAGATCTATGCGCTCCTCCA
AATGCGATACCTCGATCCGCGTCTCAACTTTCGCAACGTAAGTCCCAAGC
GCAGGCAGCCGATTTTGGGCGAGGAGCACCTGAGAAACTCGCTCTGGATG
CCCCACATATTTCTAGCCAATGAGCGCGACTCCAGTATTTTGGGTCTCAC
GGAGAAGGACATCCTCACCTCGATATCGCCCGATGGCACAGTGATCGTTT
CGAATCGCATCAAGGCGACACTCTATTGCTGGCTCAACCTTAAGAAGTTC
CCATTCGATGAGCAGCACTGCTCGACGGTGCTGGAGAGTTGGATGTACAA
TACGTCGGAACTGGTCCTCCACTGGGAGCAGAAGCGTCCGATAACCTACG
ATGGGGCACTGCATCTCACCGAGTTTGTGCTGCAGCGTTCCTGGTCAAAC
GAGACGGTAATCAATGCCGATTTGAGTGACCTGCGTCATGGAGCCTTTGC
CGGCAACTACAGCTCCCTCAGCTTCACCGTTCACCTGACGCGAGTGGTTG
GCTTTTACCTGATGGACTACTTTCTACCCTCCATGCTGATTGTGGCCATA
TCCTGGGTATCGTTCTGGCTGCAAGCAGATCAGGCGCCGCCGCGCATCAC
GCTGGGCACCAGCACCCTGCTGACATTCATTACCCTGGCCTCGGCACAGG
GAAAGACTCTGCCAAAGGTTAGCTACATCAAGGTGTCAGAGGTGTGGTTC
CTGGGCTGCACCATCTTCATATTTGGCAGCATGGTGGAGTTCGCCTTTGT
TAACACGATTTGGCGTCGTAAGAAGAGTGTGCCCGTCAAGAAACTGAACA
GCAAACACATCCTGAAGTCAACTCTATCGCCGAATCTGCTCAGACGACGC
AGTCACGCCAGATCCAGATCCTTTTCGGGCACGGCTCTGCATAAGACAGC
GGATACCGGCTCGCTGGGCGGTGCCGGTTTCAACAATTACCTAACCGTCA
ATTTGCCCATCACCACGATTAAGGAGGGCCAAGTTCTGGATCAGCAGAGG
ACCAGCCGCGTCGTCCAGAAGATGGATGTTAACTTTGTGGAGAGTGCCTT
TGGATCCATGGGCTCTGCCCAGTCCACTGGAGCGATCAGTGCTGCCAGCA
GCAGCCAAACTTTGACCAACAATAACCGAACGGAGAGCGCGGGGCACCAG
GAGGAGATCGATCTGAGTGGCTGGACCACGCTAACGCCCCAGGAAATAGC
CATGTGGATTGATAGTCGAGCCAGATTCGTTTTTCCGCTCTCCTTTCTCG
TCTTTAATCTGTTTTTCTGGACATTTGTCTACTGTATTGCAAGCTTTCTA
GACCAT
BO20233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-RA | 1575 | CG6927-PA | 1..1572 | 17..1588 | 7860 | 100 | Plus |
| CG7589-RB | 1530 | CG7589-PB | 733..1078 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RA | 1530 | CG7589-PA | 733..1078 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RB | 1530 | CG7589-PB | 368..602 | 366..600 | 260 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-RA | 1868 | CG6927-RA | 80..1651 | 17..1588 | 7860 | 100 | Plus |
| CG7589-RB | 2249 | CG7589-RB | 1313..1658 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RA | 1950 | CG7589-RA | 1014..1359 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RB | 2249 | CG7589-RB | 948..1182 | 366..600 | 260 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4907459..4908604 | 443..1588 | 5730 | 100 | Plus |
| X | 23542271 | X | 4906979..4907407 | 17..445 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 31303276..31303587 | 1063..752 | 435 | 76 | Minus |
| 3L | 28110227 | 3L | 17473694..17473862 | 908..1076 | 410 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:03:30 has no hits.
BO20233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:55 Download gff for
BO20233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 68..1639 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:35 Download gff for
BO20233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 80..1651 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:42 Download gff for
BO20233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 80..1651 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:42 Download gff for
BO20233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4906979..4907405 | 17..443 | 100 | -> | Plus |
| X | 4907460..4908604 | 444..1590 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:35 Download gff for
BO20233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4801012..4801438 | 17..443 | 100 | -> | Plus |
| arm_X | 4801493..4802637 | 444..1590 | 99 | | Plus |
BO20233.pep Sequence
Translation from 16 to 1606
> BO20233.pep
MEWSLIISILLNCLYASASALDEDCPTLDDGDSLSQTQLLDRLTHGCRYD
RLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLD
PRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDIL
TSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELV
LHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSS
LSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTST
LLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR
RKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSL
GGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGS
AQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDS
RARFVFPLSFLVFNLFFWTFVYCIASFLDH
BO20233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-PA | 524 | CG6927-PA | 1..524 | 1..524 | 2730 | 100 | Plus |
| CG7589-PB | 509 | CG7589-PB | 11..509 | 3..524 | 1431 | 53.5 | Plus |
| CG7589-PA | 509 | CG7589-PA | 11..509 | 3..524 | 1431 | 53.5 | Plus |
| CG11340-PA | 526 | CG11340-PA | 60..526 | 24..524 | 1263 | 49.3 | Plus |
| GluClalpha-PO | 455 | CG7535-PO | 33..346 | 36..363 | 442 | 29.9 | Plus |
