BO20238.complete Sequence
1018 bp assembled on 2009-05-13
> BO20238.complete
GAAGTTATCAGTCGACATGCAGACGATCCGTCGGTTGGAGACGGCCGCCG
GTAATCTGTACAAGGAGAAGATCATTCGCGGCTTCTGTCATCTGTATTCC
GGCCAGGAGGCATGCGCCGTTGGCATGAAGGCGGCGATGCGGGATGTGGA
CAACATCATCTCGGCGTACCGTGTCCACGGATGGACCTACCTGATGGGCG
TCTCACCCAGCGGCGTACTGGCTGAGCTCACCGGTGTCCAGGGTGGCTGT
GCCCGCGGCAAGGGTGGCTCCATGCACATGTACGCACCGAACTTCTACGG
AGGCAATGGCATCGTGGGTGCTCAAGTTCCTTTGGGTGCCGGCGTTGGCT
TGGCCTGCAAGTACAAGGGCAATGGCGGCATGTGCCTGGCCCTCTACGGT
GATGGTGCCGCCAATCAAGGACAGGTGTTCGAGGCTTACAACATGGCCTA
CCTGTGGAAACTGCCTGTGATCTTTGTCTGCGAGAACAACAACTACGGAA
TGGGCACCAGTTCTGAGCGTGCTTCCTGCAACACTGATTACTATACCCGC
GGCGACGCTCTGCCCGGAATCTGGGTGGACGGCATGGATGTGCTGGCCGT
GCGCAGCGCCACCGAGTTCGCCATCAACTATGTGAACACTCACGGACCTT
TGGTGATGGAGACGAACACGTACCGATACTCTGGACACTCCATGTCCGAT
CCGGGCACATCGTACCGCACACGCGAGGAGATCCAGGAGGTGCGCCAGAA
GCGTGATCCCATCACCTCCTTCAAGGAGCTGTGCATCGAGCTGGGTCTGA
TTACCACCGATGAAGTTAAGGCCATCGATCTGAAGGTACGCAAGGAGGTC
GACGAGGCCACCGCCTTCGCCAAGTCCGATGCCGAGCTGGGCGTGAGCCA
CCTCTGGACGGACGTGTACTCCAACAATCTGGAGCCCAAGCTGCGCGGCA
CCATCGCCTACGATATTGATCACATCCAGGAGCGCAAGGGCGTCAATCAC
GCAAGCTTTCTAGACCAT
BO20238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RB | 987 | CG7010-PB | 1..984 | 17..1000 | 4920 | 100 | Plus |
| l(1)G0334-RD | 1200 | CG7010-PD | 214..1197 | 17..1000 | 4920 | 100 | Plus |
| l(1)G0334-RA | 1200 | CG7010-PA | 214..1197 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-RB | 1992 | CG7010-RB | 653..1636 | 17..1000 | 4920 | 100 | Plus |
| l(1)G0334-RD | 1667 | CG7010-RD | 328..1311 | 17..1000 | 4920 | 100 | Plus |
| l(1)G0334-RA | 1760 | CG7010-RA | 421..1404 | 17..1000 | 4920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4703639..4704120 | 17..498 | 2410 | 100 | Plus |
| X | 23542271 | X | 4704194..4704518 | 497..821 | 1625 | 100 | Plus |
| X | 23542271 | X | 4704586..4704767 | 819..1000 | 910 | 100 | Plus |
| X | 23542271 | X | 4706459..4706790 | 387..718 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:36:51 has no hits.
BO20238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:54 Download gff for
BO20238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RD | 328..1311 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:23 Download gff for
BO20238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RA | 421..1404 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:22 Download gff for
BO20238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0334-RA | 421..1404 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:22 Download gff for
BO20238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4703639..4704119 | 17..497 | 100 | -> | Plus |
| X | 4704195..4704517 | 498..820 | 100 | -> | Plus |
| X | 4704588..4704767 | 821..1002 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:23 Download gff for
BO20238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4597672..4598152 | 17..497 | 100 | -> | Plus |
| arm_X | 4598228..4598550 | 498..820 | 100 | -> | Plus |
| arm_X | 4598621..4598800 | 821..1002 | 98 | | Plus |
BO20238.pep Sequence
Translation from 16 to 1018
> BO20238.pep
MQTIRRLETAAGNLYKEKIIRGFCHLYSGQEACAVGMKAAMRDVDNIISA
YRVHGWTYLMGVSPSGVLAELTGVQGGCARGKGGSMHMYAPNFYGGNGIV
GAQVPLGAGVGLACKYKGNGGMCLALYGDGAANQGQVFEAYNMAYLWKLP
VIFVCENNNYGMGTSSERASCNTDYYTRGDALPGIWVDGMDVLAVRSATE
FAINYVNTHGPLVMETNTYRYSGHSMSDPGTSYRTREEIQEVRQKRDPIT
SFKELCIELGLITTDEVKAIDLKVRKEVDEATAFAKSDAELGVSHLWTDV
YSNNLEPKLRGTIAYDIDHIQERKGVNHASFLDH
BO20238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0334-PB | 328 | CG7010-PB | 1..328 | 1..328 | 1744 | 100 | Plus |
| l(1)G0334-PD | 399 | CG7010-PD | 72..399 | 1..328 | 1744 | 100 | Plus |
| l(1)G0334-PA | 399 | CG7010-PA | 72..399 | 1..328 | 1744 | 100 | Plus |
| l(1)G0334-PC | 443 | CG7010-PC | 116..443 | 1..328 | 1744 | 100 | Plus |
| CG7024-PA | 479 | CG7024-PA | 70..390 | 1..321 | 1075 | 61.1 | Plus |
