BO20274.complete Sequence
3478 bp assembled on 2010-12-13
GenBank Submission: KX796250
> BO20274.complete
GAAGTTATCAGTCGACATGGACCAGTCTAAACAGGTTTTGCGGGACTATT
GCGGCGACGGCAATGGTACCTGTGCATCGTCCTTGAAGGAAATCACCTTA
ATTGAGACCGTGACCAGTTTCCTGGAGGAGAATGGCGCCGCCGAAATCGA
CAGAAGGGTCCTGCGCAAACTAGCCGAGGCACTGTCCAAAAGCATAGACG
ACACCAGTCCGGGAGCCCTGCAAGATGTCACCATGGAGAACTCATATGCC
AGTTTTGACGTTCCACGACCTCCAGGCGGCGGCAACTCGCCCTTGCCGTC
ACAGGGTCGCTCTGTACGCGAATTGGAGGAGCAGATGTCCGCGCTGCGCA
AGGAGAACTTCAATCTAAAGCTGCGCATCTACTTCCTCGAGGAGGGTCAG
CCGGGTGCCCGGGCAGACAGCTCCACAGAATCCTTAAGCAAACAGCTCAT
CGATGCCAAGATCGAAATCGCGACATTGAGAAAAACTGTCGATGTAAAGA
TGGAGCTGCTCAAGGATGCCGCTCGAGCCATTTCTCATCACGAGGAATTG
CAGCGCAAAGCAGACATTGACAGCCAGGCAATAATCGACGAGTTGCAAGA
GCAAATACACGCCTATCAGATGGCGGAGTCTGGTGGTCAACCTGTCGAAA
ATATTGCCAAAACCAGGAAAATGTTGCGCCTTGAATCGGAGGTGCAGAGA
TTGGAGGAGGAACTGGTGAATATCGAAGCTCGTAACGTTGCAGCCCGGAA
CGAGCTGGAATTCATGTTGGCCGAGCGCCTAGAATCCCTAACAGCCTGTG
AGGGCAAGATTCAAGAGCTGGCCATCAAGAATTCCGAACTGGTAGAGCGT
CTTGAAAAGGAAACAGCATCCGCCGAGTCATCCAACGCCAATCGAGATCT
GGGCGCCCAACTGGCGGATAAGATTTGCGAGCTGCAGGAAGCCCAGGAGA
AGCTCAAGGAGCGCGAGCGCATCCACGAGCAGGCATGCCGCACCATTCAA
AAGCTAATGCAAAAGCTAAGCAGCCAGGAGAAGGAGATAAAGAAGCTCAA
CCAGGAGAACGAACAGTCGGCAAACAAGGAGAACGACTGCGCTAAGACGG
TAATTTCGCCATCCTCCAGCGGCCGTTCCATGAGTGACAACGAGGCCAGC
TCCCAGGAAATGTCCACCAACCTCAGGGTGCGCTACGAACTAAAGATCAA
CGAGCAGGAGGAGAAGATCAAGCAGTTGCAGACGGAAGTAAAGAAGAAGA
CGGCGAATCTGCAAAATCTGGTCAACAAGGAGCTATGGGAGAAAAATCGT
GAGGTGGAGCGCCTCACTAAGCTGCTGGCTAACCAACAGAAGACGTTGCC
ACAGATAAGTGAGGAATCCGCCGGAGAAGCAGATCTGCAGCAATCCTTCA
CGGAGGCGGAGTACATGAGGGCATTGGAGCGAAACAAGCTGCTGCAGCGA
AAGGTGGATGTGCTCTTCCAGCGCCTGGCAGACGATCAACAGAACAGCGC
TGTGATTGGGCAGTTGCGTTTGGAACTTCAACAAGCTCGCACGGAAGTCG
AGACGGCGGATAAGTGGCGTCTTGAATGCGTCGATGTCTGCAGTGTGCTG
ACAAACCGATTGGAAGAGCTGGCTGGTTTCCTCAACTCTCTGCTGAAGCA
CAAAGATGTTCTTGGCGTGTTGGCCGCTGATCGACGCAATGCCATGCGTA
AGGCGGTGGATCGCAGCTTGGATCTTTCCAAGAGTCTTAATATGACTCTG
AATATAACAGCTACATCCTTGGCTGATCAAAGCCTCGCTCAGCTGTGCAA
TCTATCCGAGATCTTGTACACCGAAGGTGATGCAAGCCACAAAACTTTCA
ATTCCCACGAAGAGCTGCACGCCGCTACTTCGATGGCTCCGACTGTAGAG
AACTTAAAGGCCGAGAATAAGGCTCTTAAAAAGGAGTTGGAAAAGCGACG
CAGCTCAGAAGGACAGAGGAAAGAGCGCCGCTCCTTACCGCTGCCCTCCC
AGCAGTTCGATAACCAGAGCGAGTCAGAGGCCTGGTCAGAGCCTGACCGC
AAGGTTTCCTTGGCACGCATTGGCCTGGACGAAACCTCCAACAGTTTGGC
AGCGCCTGAGCAGGCGATCAGCGAGTCGGAGAGCGAGGGAAGAACCTGTG
CTACCCGTCAGGATCGCAATCGCAACAGTGAGCGTATTGCCCAGCTGGAG
GAGCAGATTGCCCAGAAAGACGAACGTATGCTTAATGTGCAATGCCAAAT
GGTGGAGCTGGACAATAGATATAAGCAGGAGCAATTGCGCTGCCTCGATA
TTACTCAACAATTGGAGCAATTGCGTGCTATCAACGAAGCTCTGACTGCA
GACCTGCATGCTATAGGATCACACGAAGAGGAACGCATGGTCGAGTTGCA
ACGCCAGCTGGAGCTTAAGAACCAGCAGATTGATCAACTAAAACTGGCCC
ACAGCACTCTGACGGCAGATTCGCAGATAACCGAGATGGAGCTGCAGGCG
TTGCAGCAGCAAATGCAGGAAATAGAGCAGCTGCACGCCGATTCAGTAGA
AACCCTGCAATCCCAGCTACAGAAACTCAAACTAGATGCCGTGCAGCAGC
TAGAAGAGCACGAGCGCCTGCATCGCGAGGCTCTTGAACGCGACTGGGTG
GCACTGACCACTTACCAGGAGCAGGCTCAACAGTTGTTGGAACTGCAACG
ATCCCTGGACTATCACCAAGAAAATGAGAAGGAGCTGAAGCAGACGCTTG
TCGAGAACGAGCTGGCCACGCGGGCCCTCAAAAAGCAGCTAGACGAAAGC
ACTCTGCAGGCCTCCAAGGCGGTGATGGAGCGCACAAAGGCCTACAACGA
CAAGCTGCAACTGGAGAAGCGTTCCGAGGAATTGAGGCTGCAACTGGAGG
CGCTCAAGGAAGAGCATCAAAAGCTGCTGCAGAAGCGCTCCAACAGCAGC
GACGTTTCCCAGTCCGGTTACACATCCGAAGAGGTGGCGGTGCCCATGGG
GCCACCTTCGGGTCAGGCTACAACGTGCAAACAGGCTGCTGCCGCAGTTT
TGGGCCAGAGGGTGAACACATCATCTCCCGATCTGGGCATAGAAAGCGAT
GCCGGCAGGATATCTAGCGTAGAAGTATCCAACGCCCAACGTGCGATGCT
TAAGACTGTAGAGATGAAAACGGAGGGATCAGCGAGTCCAAAGGCAAAGT
CAGAGGAATCTACATCACCGGACAGCAAGAGCAACGTGGCAACTGGTGCA
GCCACAGTACACGACTGTGCCAAGGTAGATCTTGAAAACGCCGAGTTGCG
GCGCAAACTAATCCGCACCAAGCGCGCATTTGAAGACACCTACGAAAAGT
TGCGTATGGCTAACAAAGCAAAAGCACAAGTTGAGAAAGACATCAAAAAT
CAAATACTAAAAACGCACAATGTGCTGCGAAACGTTCGATCAAACATGGA
GAATGAGTTAGCAAGCTTTCTAGACCAT
BO20274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RA | 3447 | CG4832-PA | 1..3444 | 17..3460 | 17205 | 100 | Plus |
| cnn-RN | 3363 | CG4832-PN | 102..3360 | 202..3460 | 16280 | 100 | Plus |
| cnn-RM | 3363 | CG4832-PM | 102..3360 | 202..3460 | 16280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-RA | 4322 | CG4832-RA | 117..3561 | 16..3460 | 17210 | 100 | Plus |
| cnn-RN | 4310 | CG4832-RN | 291..3549 | 202..3460 | 16280 | 100 | Plus |
| cnn-RM | 4399 | CG4832-RM | 380..3638 | 202..3460 | 16280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13440392..13442518 | 3206..1080 | 10635 | 100 | Minus |
| 2R | 25286936 | 2R | 13444765..13445138 | 619..246 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 13444427..13444696 | 887..618 | 1350 | 100 | Minus |
| 2R | 25286936 | 2R | 13440075..13440329 | 3460..3206 | 1260 | 99.6 | Minus |
| 2R | 25286936 | 2R | 13442934..13443128 | 1081..887 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 13450174..13450359 | 201..16 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13445547..13445590 | 245..202 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:20 has no hits.
BO20274.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:52 Download gff for
BO20274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 128..3571 | 17..3462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:06 Download gff for
BO20274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 118..3561 | 17..3462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:38 Download gff for
BO20274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnn-RA | 118..3561 | 17..3462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:38 Download gff for
BO20274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13440073..13440328 | 3207..3462 | 98 | <- | Minus |
| 2R | 13440392..13442516 | 1082..3206 | 100 | <- | Minus |
| 2R | 13442934..13443128 | 887..1081 | 100 | <- | Minus |
| 2R | 13444428..13444694 | 620..886 | 100 | <- | Minus |
| 2R | 13444765..13445138 | 246..619 | 100 | <- | Minus |
| 2R | 13445547..13445590 | 202..245 | 100 | <- | Minus |
| 2R | 13450174..13450358 | 17..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:06 Download gff for
BO20274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9327578..9327833 | 3207..3462 | 98 | <- | Minus |
| arm_2R | 9327897..9330021 | 1082..3206 | 100 | <- | Minus |
| arm_2R | 9330439..9330633 | 887..1081 | 100 | <- | Minus |
| arm_2R | 9331933..9332199 | 620..886 | 100 | <- | Minus |
| arm_2R | 9332270..9332643 | 246..619 | 100 | <- | Minus |
| arm_2R | 9333052..9333095 | 202..245 | 100 | <- | Minus |
| arm_2R | 9337679..9337863 | 17..201 | 100 | | Minus |
BO20274.pep Sequence
Translation from 16 to 3478
> BO20274.pep
MDQSKQVLRDYCGDGNGTCASSLKEITLIETVTSFLEENGAAEIDRRVLR
KLAEALSKSIDDTSPGALQDVTMENSYASFDVPRPPGGGNSPLPSQGRSV
RELEEQMSALRKENFNLKLRIYFLEEGQPGARADSSTESLSKQLIDAKIE
IATLRKTVDVKMELLKDAARAISHHEELQRKADIDSQAIIDELQEQIHAY
QMAESGGQPVENIAKTRKMLRLESEVQRLEEELVNIEARNVAARNELEFM
LAERLESLTACEGKIQELAIKNSELVERLEKETASAESSNANRDLGAQLA
DKICELQEAQEKLKERERIHEQACRTIQKLMQKLSSQEKEIKKLNQENEQ
SANKENDCAKTVISPSSSGRSMSDNEASSQEMSTNLRVRYELKINEQEEK
IKQLQTEVKKKTANLQNLVNKELWEKNREVERLTKLLANQQKTLPQISEE
SAGEADLQQSFTEAEYMRALERNKLLQRKVDVLFQRLADDQQNSAVIGQL
RLELQQARTEVETADKWRLECVDVCSVLTNRLEELAGFLNSLLKHKDVLG
VLAADRRNAMRKAVDRSLDLSKSLNMTLNITATSLADQSLAQLCNLSEIL
YTEGDASHKTFNSHEELHAATSMAPTVENLKAENKALKKELEKRRSSEGQ
RKERRSLPLPSQQFDNQSESEAWSEPDRKVSLARIGLDETSNSLAAPEQA
ISESESEGRTCATRQDRNRNSERIAQLEEQIAQKDERMLNVQCQMVELDN
RYKQEQLRCLDITQQLEQLRAINEALTADLHAIGSHEEERMVELQRQLEL
KNQQIDQLKLAHSTLTADSQITEMELQALQQQMQEIEQLHADSVETLQSQ
LQKLKLDAVQQLEEHERLHREALERDWVALTTYQEQAQQLLELQRSLDYH
QENEKELKQTLVENELATRALKKQLDESTLQASKAVMERTKAYNDKLQLE
KRSEELRLQLEALKEEHQKLLQKRSNSSDVSQSGYTSEEVAVPMGPPSGQ
ATTCKQAAAAVLGQRVNTSSPDLGIESDAGRISSVEVSNAQRAMLKTVEM
KTEGSASPKAKSEESTSPDSKSNVATGAATVHDCAKVDLENAELRRKLIR
TKRAFEDTYEKLRMANKAKAQVEKDIKNQILKTHNVLRNVRSNMENELAS
FLDH
BO20274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnn-PA | 1148 | CG4832-PA | 1..1148 | 1..1148 | 5662 | 100 | Plus |
| cnn-PN | 1120 | CG4832-PN | 35..1120 | 63..1148 | 5354 | 100 | Plus |
| cnn-PM | 1120 | CG4832-PM | 35..1120 | 63..1148 | 5354 | 100 | Plus |
| cnn-PB | 1120 | CG4832-PB | 35..1120 | 63..1148 | 5354 | 100 | Plus |
| cnn-PE | 1130 | CG4832-PE | 35..1130 | 63..1148 | 5333 | 99.1 | Plus |
