BO20285.complete Sequence
4480 bp assembled on 2010-12-13
GenBank Submission: KX794467
> BO20285.complete
GAAGTTATCAGTCGACATGAGCACGAACGTTGTTGTGAGCATGGAGGAGA
AGGCGGTGGCCGACGACCTGCCGTACTTCCCGGAGAAGTTTCCGGGCAAG
GTGTGCTGTTTATGCAATCTCGGCGAGAAGAGTGCCTTGGGCCAGGGCGA
GATTCTACAACTGAAGGCGCCCGCGCCCGCCGAGATCAAGGATAAATATC
CGACGGATCGGCTGAGGGAGGACGGATCCAGGCTGTTATACGGGCCTAAG
CAGGCCGCTTCTAGTTCGGGCGATTGTCACTACGAGCTGGACAAGATTGG
ACAGCCGGACGTCGTGCATCCCGCCGAATTTCTTGACGAGGGGTTCGTCT
ACGTGCACCGCATGTGCATCATGTGGTCGCTGCGCAAAAGTCAGATAAGC
GATGCAGATGGCGCGTACTTTGCCACCCACTTCGCGGAGTTCCTGGAGCA
AAAGTGCAACTTTTGTGGACGCTACGGGGCCTCCATCAACTGCAAGATGA
ACTGCCGCCAGGTGCACCATTGGCCGTGTGCCGCCGCTGCTGGGTGCCTT
CTGATCCTCGAGAGCTTTACGGTCTTCTGCACGGAACATTTGAGCCAGGT
GCCTGTGATATGCAGCGACAATAATGTGGAGTGTCTGTCCTGCTCCTCGC
TGGGGGATCTGTCCAAGCTGATCATGTGTAGTACCTGCGGAGACCACTTT
CATTCGACCTGCATTGGTCTGGCCAATTTGCCGGATACGCGTTCTGGGTG
GAACTGCGCCCGTTGCACAAAATGCCAGATTTGCAGGCAGCAAGACTCGA
ACGACACCAAGTACGTTAAGTGTGAGCAATGCCAGAAGACTTACCACGCC
TCCTGCTTGCGACCAGTTATCTCAGCCATCCCCAAATATGGCTGGAAGTG
CAATCGCTGTCGCGTCTGTACGGATTGTGGTTCAAGAACTCCTGGCGGCG
GCAGCTCCTCCCGCTGGCATAGCCACTACACAATCTGCGATTCGTGCTAT
CAGCAGCGGAACAAGGGCTTTTCCTGCCCGATTTGCCAGAAAGCGTACAG
GGCAGCATCGCACAAGGAAATGGTCAAGTGCAGCTGGTGCAACAAATTTG
TGCACAGTACGTGTGACGAAGAGGCGGATTTAACGGCCTACCACAAGAAG
AAGGAGCAAAACCCAGATTACGACTACGTGTGTCCGAATTGCAAGAGTAA
TTCGTCGGGCCCGGGATCATCCCAACAGACAATCGACTCGATCGTGCTGT
CCGCCATGGATTCGTCGTCGGAGCAACTGAGCCTCAAGGAAATCGAACTT
GACCCGCTGGAGGGCAAACCCACAATGGATCCATCGAGCGATGAGCTCCA
CAAGCTACCCACCGGCAAGAAAAAAGTGTGCCTTACGAGTGTTCGCGGTA
GAAGCGGAAAGTTCGTCCTACACCGCATGGGTGTGATGTCGCAGATCAAC
AAGAAACGCAGCACCCGAGGCAAGGGGCGCCAGCTTGCGCTGCCCACCAT
CTCGAGCGATCGCTGCCTGAGTCGCAGCATGGAAACAGATCTGACCAGCG
ACAAAAAGCTGCTGCTCTGCTCGGCGCGGGATAAGTTTATCCAAGCGCAA
GACATCTGCGTAATGTGCGGCTCGCTGGGCATTGAGAGCGATTCCGTGAT
GATCACCTGCGCACAGTGCGGCCAATGCTATCATCCGTACTGCGCCGGCG
TGAAGCCTTCGCGAGGCATCCTGCAGAAGGGTTGGCGATGCCTGGACTGC
ACAGTGTGCGAGGGATGTGGCAAGAAGAACGACGAGGCGCGCCTGCTCCT
GTGCGACGAGTGCGACATTTCGTATCACATTTACTGTGTGAATCCTCCGC
TGGAAACCGTGCCCACGGGCAACTGGAAGTGCTCGTTCTGTACACTGTGC
CAGAAATGCGGTCGCAATCCCACCGAGAAGAGCGAGTTCGGGGACTCCAA
CATGCTCGAGTGCCCATCCTGCACCAGCCAATCCTCGTGTCCCGTCTGCA
AAGTCTCGTACAGCAACGGCGAGATGATCATCCAGTGCGAGCACTGCGAG
CTATGGGCGCACTTCCACTGCGACTCTGTCAATGCCCAGCTGACCATTGA
CCACTACGACAACAATGTGTACAAGTGTTTCAAGTGCCGCTGCTCGACGA
GGAGCACTAACTCCCTGGCGGATGCCAAGTTTGGTAACGAGGATTCGCTG
GCCATAACTCCCCAGGGCAGCAAACCATTTGTGCACATCACAGCCTCCTC
CGGGCCGTCTTTCGATTCTAAGAGTGGTGCCGAGCGAAATCATCCTACCT
TATCCGGCGATATGCCCGAGTCTGCTCCAGAAGCGCTCCACTGGATTGAC
GGAGTGTGCCTGAGCGAAAGCGGATTGGGCATGATCAAGTCATTGTCCAC
GGAGATCAAACGCAAGCGCAAAATGCGACAAGCCCTCGGCAATGGCAAGG
ATGGACAATTGGAGGCCGCCGCCGAGGAAGCGCTGGAAAAGTACAAAGAC
GGCATGGTCTGGGATGGGACGGAGAACGCTATTCCCGAGGGTTTCACCAT
CTCCATTAACGACGAGGGAGTGAACATATTACGCAAGAAGCGACAGCGCA
ATCTGCAGAAGCTGGGCATTGGTGGATTCTCCGTTCGCAACCGAGGTCTC
AAGAAGGACAGCGAGGAGACGACGGCCGTTGACCAAATAAATTCCCTTAT
GACCATGGACAAAAAGAAGAAAATCATACGAAAGAAGCAGAAGAACAAGC
TGATTGAAGCCTATCCCGTGTACTTGCAAGAGGCCTTCTTCGGAAAACCT
CTGCTGGAAGGTGGAGAGCTTGTCATGGCCGATACAGATTCCTCTGACGA
AATTGATGCGTCCATGAAGGTTTACTTCACGCGGCCCGAGGGCAAGAGTC
CTGCCAACCAGGACACACTGGCGGTGAACAAGAGTCCAGCGAAGACCGTG
AAGAAAGTTAAAGCTGAGTTGAAAACTGAGAACAAAACTGTTTTCATTCA
GCAAATGCCCATGGGAATCCAGAACAAAAACGGAACGACGCCAGTGTCTA
ATGTTTTTGATCCCTTGCAAGCGGAGATTTCGAACACTGTCTTTGCTAAC
CGGCATCCTTTGGATGCGTTGGCTTCACCAAATGTTCCGGAACTGGACAT
GGCTAACTCTGTTAGTACGGTTCCATCAGCTGAAGTCATTGAAAAACCAA
TGCGGGAATCACCTGCGGTCCTGGTCGACAGTTTCATGGTCCCCAACCAG
TTGCCACAGGAACAGAAGTTTCACAATCAGCTATATTTGGGCGGAAATAC
TTTGGTTAATCCCGCCCAGCAGCTTCAGTTCCGTCAGCAGGCACCACAAA
ATGCCAATAAGCAGAATATGCAAACTATAATGAGCCAAGTCGTTTTGCAA
ACCGAAAAGAGACCAGAGGAGGAGCAGAAGGTTGTGGAGCCCGTGACGGA
AACCCTGAACGCTGGCACTCAAAAGACGGCGGAGAAAATGCGCAAGGATG
AGGATCTTGGGCTCATGGCCACCATTTCGGCCGTGCTGTATGCCAATACT
GAGCATCCCAACCTGAAGGAGTTGTTTCCGATTTGGAACGACCGCTGCAA
GCAGATTCTGAAGAGGTGGCGCTCGCTGTGCAACGAGAAGAAGGCGCCGT
TCTTGCAGAAGGCCAAGGACAATCGCTCAGCACTGCGGCAGAGGCGGGAA
CAGAACAAAATACCTATGCCACCGAAACCACAGAAGCAGGAGGAAATGGG
AAGAGTGTGGAAACAACCGCCCAAGCTGAAGGAAGACCAGCCGAACATGT
TTGTCACGTACAATGGAAACGCCTACGATATGGGCAACTATGTTGGTGGC
TCGGCGCAGGCAGCGTCCAATAATCCCAATCCGCATCACGTGATGCCGAA
CGTTAACGATAATCTGGTGATTAAGGCCACGATGCAAAGGACTCAGGTGC
ACACGACAGCAGCCAGCACCTTGAAAATGACCACCGTGGACAATAGGCTG
GAGTTGAACACGGCGGTGTACGGCACGGAACCCATTGGCGACAAGAAGCT
CAGGAACCTGCTGCAGAAGAACAGCACGGAGCCGATGCTCATGGGGGCCA
ACTCGGACTTGTTCTTGGGCAACGATGTAATGCGGCTGGGAATGATGCAG
AACACACCCATTACGCAGAACAATCCCATGCTGAGCATAAGTGGAAAATC
TCAGCCATCTGAAGGCAGGTCCTTGGAGCAGGATGTGAAGTTGGGCGAGC
CGCAGGAGGCAACCTCTTCCGCCGTGGAGTTGGAGAATGTCGGATTCAGC
GACCTTCTGGGAGGACTCGGCGAGGGCGACGACGACGACCTACTCAAGTC
GCTCACTTCCGAAATGGGAGACGACTTCAATATCCTGGAGTACGCGGACC
CAGAACTGGACGTCAATGTTCTCAACTCCCTAGATTTTGATGACAATGAA
AAGTGCTCTACAGCAAGCTTTCTAGACCAT
BO20285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpt-RA | 4449 | CG5591-PA | 1..4446 | 17..4462 | 22230 | 100 | Plus |
| Lpt-RB | 4437 | CG5591-PB | 1..4434 | 17..4462 | 22015 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpt-RA | 4608 | CG5591-RA | 110..4555 | 17..4462 | 22230 | 100 | Plus |
| Lpt-RB | 4596 | CG5591-RB | 110..4543 | 17..4462 | 22015 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23899992..23901955 | 1096..3059 | 9820 | 100 | Plus |
| 2R | 25286936 | 2R | 23902959..23903608 | 3813..4462 | 3250 | 100 | Plus |
| 2R | 25286936 | 2R | 23898670..23899265 | 17..612 | 2980 | 100 | Plus |
| 2R | 25286936 | 2R | 23902591..23902900 | 3503..3812 | 1550 | 100 | Plus |
| 2R | 25286936 | 2R | 23902231..23902530 | 3204..3503 | 1500 | 100 | Plus |
| 2R | 25286936 | 2R | 23899744..23899934 | 905..1095 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 23899510..23899680 | 734..904 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 23902019..23902165 | 3059..3205 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 23899324..23899446 | 612..734 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:39:36 has no hits.
BO20285.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:53 Download gff for
BO20285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5591-RA | 92..4537 | 17..4464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:08 Download gff for
BO20285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpt-RA | 110..4555 | 17..4464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:44 Download gff for
BO20285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lpt-RA | 110..4555 | 17..4464 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:44 Download gff for
BO20285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23898670..23899264 | 17..611 | 100 | -> | Plus |
| 2R | 23899324..23899446 | 612..734 | 100 | -> | Plus |
| 2R | 23899511..23899680 | 735..904 | 100 | -> | Plus |
| 2R | 23899744..23899934 | 905..1095 | 100 | -> | Plus |
| 2R | 23899992..23901955 | 1096..3059 | 100 | -> | Plus |
| 2R | 23902020..23902164 | 3060..3204 | 100 | -> | Plus |
| 2R | 23902232..23902530 | 3205..3503 | 100 | -> | Plus |
| 2R | 23902592..23902900 | 3504..3812 | 100 | -> | Plus |
| 2R | 23902959..23903608 | 3813..4464 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:08 Download gff for
BO20285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19786193..19786787 | 17..611 | 100 | -> | Plus |
| arm_2R | 19786847..19786969 | 612..734 | 100 | -> | Plus |
| arm_2R | 19787034..19787203 | 735..904 | 100 | -> | Plus |
| arm_2R | 19787267..19787457 | 905..1095 | 100 | -> | Plus |
| arm_2R | 19787515..19789478 | 1096..3059 | 100 | -> | Plus |
| arm_2R | 19789543..19789687 | 3060..3204 | 100 | -> | Plus |
| arm_2R | 19789755..19790053 | 3205..3503 | 100 | -> | Plus |
| arm_2R | 19790115..19790423 | 3504..3812 | 100 | -> | Plus |
| arm_2R | 19790482..19791131 | 3813..4464 | 99 | | Plus |
BO20285.pep Sequence
Translation from 16 to 4480
> BO20285.pep
MSTNVVVSMEEKAVADDLPYFPEKFPGKVCCLCNLGEKSALGQGEILQLK
APAPAEIKDKYPTDRLREDGSRLLYGPKQAASSSGDCHYELDKIGQPDVV
HPAEFLDEGFVYVHRMCIMWSLRKSQISDADGAYFATHFAEFLEQKCNFC
GRYGASINCKMNCRQVHHWPCAAAAGCLLILESFTVFCTEHLSQVPVICS
DNNVECLSCSSLGDLSKLIMCSTCGDHFHSTCIGLANLPDTRSGWNCARC
TKCQICRQQDSNDTKYVKCEQCQKTYHASCLRPVISAIPKYGWKCNRCRV
CTDCGSRTPGGGSSSRWHSHYTICDSCYQQRNKGFSCPICQKAYRAASHK
EMVKCSWCNKFVHSTCDEEADLTAYHKKKEQNPDYDYVCPNCKSNSSGPG
SSQQTIDSIVLSAMDSSSEQLSLKEIELDPLEGKPTMDPSSDELHKLPTG
KKKVCLTSVRGRSGKFVLHRMGVMSQINKKRSTRGKGRQLALPTISSDRC
LSRSMETDLTSDKKLLLCSARDKFIQAQDICVMCGSLGIESDSVMITCAQ
CGQCYHPYCAGVKPSRGILQKGWRCLDCTVCEGCGKKNDEARLLLCDECD
ISYHIYCVNPPLETVPTGNWKCSFCTLCQKCGRNPTEKSEFGDSNMLECP
SCTSQSSCPVCKVSYSNGEMIIQCEHCELWAHFHCDSVNAQLTIDHYDNN
VYKCFKCRCSTRSTNSLADAKFGNEDSLAITPQGSKPFVHITASSGPSFD
SKSGAERNHPTLSGDMPESAPEALHWIDGVCLSESGLGMIKSLSTEIKRK
RKMRQALGNGKDGQLEAAAEEALEKYKDGMVWDGTENAIPEGFTISINDE
GVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEETTAVDQINSLMTMDKK
KKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDASM
KVYFTRPEGKSPANQDTLAVNKSPAKTVKKVKAELKTENKTVFIQQMPMG
IQNKNGTTPVSNVFDPLQAEISNTVFANRHPLDALASPNVPELDMANSVS
TVPSAEVIEKPMRESPAVLVDSFMVPNQLPQEQKFHNQLYLGGNTLVNPA
QQLQFRQQAPQNANKQNMQTIMSQVVLQTEKRPEEEQKVVEPVTETLNAG
TQKTAEKMRKDEDLGLMATISAVLYANTEHPNLKELFPIWNDRCKQILKR
WRSLCNEKKAPFLQKAKDNRSALRQRREQNKIPMPPKPQKQEEMGRVWKQ
PPKLKEDQPNMFVTYNGNAYDMGNYVGGSAQAASNNPNPHHVMPNVNDNL
VIKATMQRTQVHTTAASTLKMTTVDNRLELNTAVYGTEPIGDKKLRNLLQ
KNSTEPMLMGANSDLFLGNDVMRLGMMQNTPITQNNPMLSISGKSQPSEG
RSLEQDVKLGEPQEATSSAVELENVGFSDLLGGLGEGDDDDLLKSLTSEM
GDDFNILEYADPELDVNVLNSLDFDDNEKCSTASFLDH
BO20285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lpt-PA | 1482 | CG5591-PA | 1..1482 | 1..1482 | 7934 | 100 | Plus |
| Lpt-PB | 1478 | CG5591-PB | 1..1478 | 1..1482 | 7897 | 99.7 | Plus |
| trx-PE | 3358 | CG8651-PE | 901..1111 | 206..392 | 226 | 26.5 | Plus |
| trx-PB | 3358 | CG8651-PB | 901..1111 | 206..392 | 226 | 26.5 | Plus |
| trx-PC | 3358 | CG8651-PC | 901..1111 | 206..392 | 226 | 26.5 | Plus |
