BO20286.complete Sequence
2308 bp assembled on 2009-08-13
GenBank Submission: KX799542
> BO20286.complete
GAAGTTATCAGTCGACATGCAGAACTGGGAGACGACAGCCACGACCAACT
ACGAGCAGCACAACGCCTGGTACAACAGCATGTTCGCGGCAAATATCAAA
CAGGAGCCAGGTCATCATCTCGACGGGAATAGCGTGGCCAGCAGTCCGCG
CCAATCGCCCATTCCCTCGACCAATCACCTGGAACAGTTCCTCAAGCAGC
AGCAGCAGCAGCTTCAGCAGCAACCCATGGATACCCTGTGCGCCATGACC
CCATCACCCAGCCAAAACGATCAAAACAGCCTGCAGCATTACGATGCTAA
CTTGCAGCAACAGTTGCTGCAGCAACAGCAGTACCAGCAGCATTTCCAGG
CAGCCCAGCAGCAACATCATCACCATCACCATCTGATGGGTGGATTCAAT
CCGCTGACGCCACCTGGTCTGCCCAATCCCATGCAGCACTTCTATGGCGG
CAATCTGCGACCCAGTCCGCAGCCCACGCCCACATCTGCCTCCACAATTG
CGCCCGTTGCAGTTGCCACTGGCAGCAGCGAGAAGTTGCAGGCACTAACA
CCACCCATGGATGTCACACCGCCTAAGTCGCCGGCCAAGTCGAGTCAGTC
GAATATTGAGCCGGAGAAGGAGCACGATCAGATGTCGAACTCCAGCGAGG
ACATGAAGTACATGGCCGAGTCCGAGGACGATGATACCAACATCCGGATG
CCCATCTACAATTCGCACGGCAAGATGAAGAACTACAAGTGCAAGACCTG
CGGCGTGGTGGCCATCACCAAGGTGGACTTCTGGGCGCACACCCGCACCC
ACATGAAACCAGACAAGATCCTGCAGTGCCCGAAGTGCCCGTTCGTCACC
GAGTTCAAGCACCACTTGGAGTACCATATCCGGAAGCACAAGAACCAAAA
GCCCTTCCAGTGCGACAAATGCAGCTACACGTGTGTCAACAAATCCATGC
TAAACTCGCACCGCAAGTCGCACAGTTCTGTGTATCAGTACCGTTGTGCG
GATTGTGATTACGCCACCAAGTATTGCCACAGCTTCAAGCTGCATCTGCG
CAAGTATGGTCACAAGCCCGGCATGGTTTTGGACGAGGATGGCACCCCGA
ATCCCTCGTTGGTCATCGATGTTTACGGCACGCGTCGTGGTCCGAAGAGC
AAGAATGGTGGACCGATTGCCAGTGGAGGAAGTGGCAGCGGCAGCCGGAA
GTCAAATGTTGCAGCTGTCGCTCCGCAGCAACAGCAATCTCAGCCAGCTC
AGCCAGTCGCCACATCTCAGCTGAGTGCCGCCCTGCAAGGATTCCCTCTG
GTTCAAGGCAACTCCGCTCCTCCGGCGGCATCTCCAGTGCTCCCGCTGCC
CGCCTCTCCTGCCAAGAGTGTGGCCAGTGTGGAACAGACGCCCAGCTTGC
CCAGTCCAGCCAATCTTCTGCCTCCTCTGGCCAGCCTTCTGCAGCAGAAC
CGCAACATGGCCTTCTTCCCCTACTGGAACCTCAATCTCCAGATGCTGGC
CGCCCAACAACAGGCCGCTGTCTTGGCCCAATTGTCGCCAAGAATGCGAG
AGCAACTGCAGCAACAGAACCAGCAGCAGAGCGACAATGAGGAGGAGGAG
CAGGACGATGAGTACGAGCGTAAGTCAGTGGACTCTGCCATGGATCTGTC
CCAAGGAACGCCAGTGAAGGAGGATGAGCAGCAGCAACAACCGCAGCAGC
CGCTGGCCATGAATCTCAAGGTGGAGGAGGAGGCCACGCCTCTGATGAGC
AGCTCGAATGCCTCGAGACGCAAGGGACGCGTCCTCAAGCTGGACACCCT
GTTACAACTGCGATCGGAGGCCATGACATCTCCCGAGCAACTGAAAGTAC
CCAGCACACCCATGCCAACTGCATCCTCGCCCATTGCCGGACGCAAACCC
ATGCCCGAGGAGCACTGCTCGGGCACCAGTTCGGCAGATGAGTCGATGGA
GACGGCCCATGTGCCGCAGGCCAATACCAGTGCCAGTTCGACGGCGTCCA
GCTCGGGGAACAGCTCCAATGCCAGCAGCAATAGCAACGGCAACAGCAGC
AGCAATTCCAGCAGCAATGGAACCACCTCAGCGGTTGCAGCTCCTCCATC
CGGAACTCCGGCGGCGGCGGGTGCCATCTACGAGTGCAAGTACTGTGATA
TCTTCTTCAAGGACGCCGTGCTCTACACCATTCACATGGGCTACCACAGC
TGCGACGATGTGTTCAAGTGCAACATGTGCGGCGAGAAGTGCGACGGACC
CGTCGGCCTCTTCGTTCACATGGCCAGGAATGCTCACTCCGCAAGCTTTC
TAGACCAT
BO20286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hb-RA | 2277 | CG9786-PA | 1..2274 | 17..2290 | 11370 | 100 | Plus |
| hb-RB | 2277 | CG9786-PB | 1..2274 | 17..2290 | 11370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hb-RA | 3338 | CG9786-RA | 164..2437 | 17..2290 | 11370 | 100 | Plus |
| hb-RB | 3181 | CG9786-RB | 516..2789 | 17..2290 | 11370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8691881..8694154 | 2290..17 | 11370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6857 | 1554..1703 | 136 | 60.9 | Plus |
BO20286.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-13 17:08:17 Download gff for
BO20286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hb-RA | 164..2437 | 17..2292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:46 Download gff for
BO20286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hb-RB | 516..2789 | 17..2292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:10 Download gff for
BO20286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hb-RB | 516..2789 | 17..2292 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:10 Download gff for
BO20286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8691879..8694154 | 17..2292 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:46 Download gff for
BO20286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4517601..4519876 | 17..2292 | 99 | | Minus |
BO20286.pep Sequence
Translation from 16 to 2308
> BO20286.pep
MQNWETTATTNYEQHNAWYNSMFAANIKQEPGHHLDGNSVASSPRQSPIP
STNHLEQFLKQQQQQLQQQPMDTLCAMTPSPSQNDQNSLQHYDANLQQQL
LQQQQYQQHFQAAQQQHHHHHHLMGGFNPLTPPGLPNPMQHFYGGNLRPS
PQPTPTSASTIAPVAVATGSSEKLQALTPPMDVTPPKSPAKSSQSNIEPE
KEHDQMSNSSEDMKYMAESEDDDTNIRMPIYNSHGKMKNYKCKTCGVVAI
TKVDFWAHTRTHMKPDKILQCPKCPFVTEFKHHLEYHIRKHKNQKPFQCD
KCSYTCVNKSMLNSHRKSHSSVYQYRCADCDYATKYCHSFKLHLRKYGHK
PGMVLDEDGTPNPSLVIDVYGTRRGPKSKNGGPIASGGSGSGSRKSNVAA
VAPQQQQSQPAQPVATSQLSAALQGFPLVQGNSAPPAASPVLPLPASPAK
SVASVEQTPSLPSPANLLPPLASLLQQNRNMAFFPYWNLNLQMLAAQQQA
AVLAQLSPRMREQLQQQNQQQSDNEEEEQDDEYERKSVDSAMDLSQGTPV
KEDEQQQQPQQPLAMNLKVEEEATPLMSSSNASRRKGRVLKLDTLLQLRS
EAMTSPEQLKVPSTPMPTASSPIAGRKPMPEEHCSGTSSADESMETAHVP
QANTSASSTASSSGNSSNASSNSNGNSSSNSSSNGTTSAVAAPPSGTPAA
AGAIYECKYCDIFFKDAVLYTIHMGYHSCDDVFKCNMCGEKCDGPVGLFV
HMARNAHSASFLDH
BO20286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hb-PA | 758 | CG9786-PA | 1..758 | 1..758 | 4036 | 100 | Plus |
| hb-PB | 758 | CG9786-PB | 1..758 | 1..758 | 4036 | 100 | Plus |
| gl-PA | 604 | CG7672-PA | 327..594 | 127..393 | 197 | 24.7 | Plus |
| gl-PC | 679 | CG7672-PC | 327..594 | 127..393 | 197 | 24.7 | Plus |
| gl-PB | 557 | CG7672-PB | 327..548 | 127..351 | 183 | 25.3 | Plus |
