BO20287.complete Sequence
1615 bp assembled on 2010-10-20
GenBank Submission: KX799019
> BO20287.complete
GAAGTTATCAGTCGACATGGGTTGGTGGAGCAAGAAAAGCGAGACGGATC
GCAGTCAGCCCAGCCAGGAACTGGTGGCGCAGGACCCGCGCACACGAGTC
CAGACTACGAGTGCAGCCACGGAGACGACCAACACAGCCGTGCAAAACTC
GACCATAACGGACAACAACAAGCAGACGGTTACCTTTCTCACCACCCGCC
AGACGGTGACGCACACGCAGCGGGCGCTGATCACGGAGACGACAACGCGA
CGCACGCCTAGTCAGGCGGAGTTAGAGGCTCTCTTCGCAAAGATAAAGAT
GGGCGGTGAGGGACCCATTGGCTCCACCACCACCACTACGACGACCACCT
CCTCGCGCTCCCGACCGCCCAGTTTGAACGGCGTCTCCTTTCGCTCCACA
CAACCCTTCAAAGCCACGGCAAGCAATGCTGGCAAACGGTCAAGCACCTT
AGTCAAGACCGAGCAGACGACAGTGACCCAAAAGAATGGGCGCACGGTCA
CCCAGCACCTGGAGACTCATAGAGTGGACCTCAAGGGAAGTCGACCTAAG
GCGACCTGGGCGTCATTTGCGTCCACTGCAAACAGCTCAACATCCAGCTA
CGTCTCACCTTATCGTCAGAAGCCAAGCATGGCCATAACTTGCACATCTC
CCAACATCAAGACACCAAAAACCACTAGCTCCACGTCCAGTTCCAGTGCC
AGCTCCATTACGAGTCCGCCCAAACCATCATCATCTGTATCCTCCATTTC
AAGCATTTTCAAGTCCGCTCCCAAGCAAGTTGACAAGCCGCTCAGTTCTA
CCGCAACTCCCAAGCCCTTCATTAGTCTGGGATCGTCAGGAGGCACCAAG
CCGAAGGTCACTGCCGTCGCGCAATCCCAAGATGCCCAGGGCACGATTTC
AACGAGCCTGGGTATCTCGAAATCAAGCCTGACCAAGAACAAACTCAAGC
CCGCCCGGGTGTATATCTTCAACCACGAGCGGTTCGATAACAAGAACGAA
TTCCGAAAGGGAAGTGCCCAGGATGTGAAGGTCTTGCGCGCCACCTTTGA
GCAGCTGAAGTGCAAAGTGGAAGTTATTACAGATGCAACCCTGGTCACCA
TTAAAAAAACAGTGCGAATGTTGCAAACCAAGGACTTTGAGGACAAAAGC
GCTCTGGTCCTCGTGATCCTCAGTCATGGAACGCGCCACGACCAGATCGC
AGCAAAGGATGACGACTACTCCCTGGACGACGACGTTGTTTTTCCCATTT
TGCGCAATAGGACGCTTAAGGACAAGCCCAAGCTGATTTTCGTTCAGGCC
TGCAAGGGCGACTGCCAACTAGGGGGCTTTATGACCGATGCCGCGCAGCC
CAATGGGTCTCCAAATGAAATCCTCAAGTGCTATAGCACGTACGAGGGAT
TTGTATCTTTTCGCACGGAGGACGGAACTCCTTTTATTCAGACACTGTGT
GAAGCTCTTAATCGATCGGGGAAGACTTCAGACATCGACACCATAATGAT
GAATGTGCGTCAAGTGGTTAAAATGCAATCCAAAGACCGCCAAATTCCAT
CTGTCACTAGCACTCTTACCTCTAAGTACGTTTTTGGAGATTATATTGCA
AGCTTTCTAGACCAT
BO20287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strica-RB | 1584 | CG7863-PB | 1..1581 | 17..1597 | 7905 | 100 | Plus |
| Strica-RA | 1584 | CG7863-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strica-RB | 2720 | CG7863-RB | 103..1683 | 17..1597 | 7905 | 100 | Plus |
| Strica-RA | 2163 | CG7863-RA | 103..1683 | 17..1597 | 7905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6021938..6023042 | 1121..17 | 5525 | 100 | Minus |
| 2R | 25286936 | 2R | 6021471..6021882 | 1533..1122 | 2060 | 100 | Minus |
| 2R | 25286936 | 2R | 6021348..6021411 | 1597..1534 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:22:09 has no hits.
BO20287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:38 Download gff for
BO20287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dream-RA | 165..1745 | 17..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:13 Download gff for
BO20287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dream-RA | 103..1683 | 17..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:48 Download gff for
BO20287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strica-RA | 103..1683 | 17..1599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:48 Download gff for
BO20287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6021344..6021411 | 1534..1599 | 97 | <- | Minus |
| 2R | 6021471..6021882 | 1122..1533 | 100 | <- | Minus |
| 2R | 6021938..6023042 | 17..1121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:13 Download gff for
BO20287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1908849..1908916 | 1534..1599 | 97 | <- | Minus |
| arm_2R | 1908976..1909387 | 1122..1533 | 100 | <- | Minus |
| arm_2R | 1909443..1910547 | 17..1121 | 100 | | Minus |
BO20287.pep Sequence
Translation from 16 to 1615
> BO20287.pep
MGWWSKKSETDRSQPSQELVAQDPRTRVQTTSAATETTNTAVQNSTITDN
NKQTVTFLTTRQTVTHTQRALITETTTRRTPSQAELEALFAKIKMGGEGP
IGSTTTTTTTTSSRSRPPSLNGVSFRSTQPFKATASNAGKRSSTLVKTEQ
TTVTQKNGRTVTQHLETHRVDLKGSRPKATWASFASTANSSTSSYVSPYR
QKPSMAITCTSPNIKTPKTTSSTSSSSASSITSPPKPSSSVSSISSIFKS
APKQVDKPLSSTATPKPFISLGSSGGTKPKVTAVAQSQDAQGTISTSLGI
SKSSLTKNKLKPARVYIFNHERFDNKNEFRKGSAQDVKVLRATFEQLKCK
VEVITDATLVTIKKTVRMLQTKDFEDKSALVLVILSHGTRHDQIAAKDDD
YSLDDDVVFPILRNRTLKDKPKLIFVQACKGDCQLGGFMTDAAQPNGSPN
EILKCYSTYEGFVSFRTEDGTPFIQTLCEALNRSGKTSDIDTIMMNVRQV
VKMQSKDRQIPSVTSTLTSKYVFGDYIASFLDH
BO20287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strica-PB | 527 | CG7863-PB | 1..527 | 1..527 | 2663 | 100 | Plus |
| Strica-PA | 527 | CG7863-PA | 1..527 | 1..527 | 2663 | 100 | Plus |
| Damm-PB | 255 | CG18188-PB | 34..251 | 309..526 | 447 | 45.3 | Plus |
| Damm-PA | 255 | CG18188-PA | 34..251 | 309..526 | 447 | 45.3 | Plus |
| Dcp-1-PA | 323 | CG5370-PA | 83..315 | 317..525 | 248 | 34.6 | Plus |
