BO20350.complete Sequence
1627 bp assembled on 2009-05-13
GenBank Submission: KX795643
> BO20350.complete
GAAGTTATCAGTCGACATGAGCATCGTTGGCGAAAACCATCCCCTCCCAA
CCCCAACCCCCGCCAGCGCCGTAGTCACCGCATCATCGGGCGGCGGTGGG
GGCGGCGCGGTCGTCATGGGCGTCGGCGTAGGCGTGACCACAGCGAATGG
ACCCCGTGTCGTCACCATTTACAAAACGGAAACGGGCTTCGGCTTCAATG
TGCGCGGCCAAGTTTCCGAGGGGGGTCAACTGCGCTCGATCAACGGCGAG
CTGTACGCCCCCCTTCAGCACGTGAGCGCCGTCCTTGAGAATGGGGCGGC
CGAGAAGGCGGGCATCAAGAAGGGCGATCGCATCCTGGAAGTAAATGGCG
TCAGCGTCGAGGGAGCCACACATAAACAGGTCGTAGATCTGATCAAATCC
GGCGGTGACTGCCTAACTCTGACGGTGATATCAGTGACACAGCAGGAGGC
CGATCGACTGGAGCCGCAGGAGGATCAGAGCGGTTACTCCTACATCGATT
ATTCGGACAAGCGCTCGCTGCCCATTAGCATACCGGACTATGGGATCGTG
AATCGAAATGGCGAGCGGTACATCGTCTTCAATATACACATGGCTGGAAG
GCAGCTCTGTTCGCGTCGCTATCGAGAGTTTGCTAACCTGCACTCGCTGC
TGCGCAAGGAGTTTTCCGGCTTTAACTTCCCCAAGCTGCCCGGCAAGTGG
CCCTTCCAGCTAAGCGAACAGCAGCTGGACACGAGGCGGCGCGGTCTGGA
GCAGTATCTGGAGAAAGTCTGTGCTGTGCGGGTGATTGCCGAGAGCGATG
CCGTTCAGGACTTTCTCACCGATACGGAGGATGATATATCCGCATCGCCG
GTGGACATTAAGGTGATGCTGCCCGATCACGAAGTTAGCACCGTGTCGGT
GAAAAAGTCCTCCAATGCCCAGGTGGTGTGGGAGATTCTGGTGCAGCGCG
CCAATCTCACCGCCTACACGCAGCAGTATTTTTACCTGTTCGAGATTGTC
GAGTACAATTTTGAGCGAAAGCTGCAGCCGCACGAGATTCCACATCAGCT
GTACGTGCAGAACTACAGCACGGCCTCATCCACCTGCCTTTGCGTCCGTC
GCTGGCTCTTCTCGGTGGCCAAGGAGCTGACGCTGCCGGACGGCGAACAG
GCTGGCCGCTTTATCTTCTATCAGGCGGTCGACGAGGTGAATCGCGGCAA
TATCCGAGCCGATGGTCGCCTGTATGAGCTGAAGGCGCTGCAGGACGCCA
AGAAAGCGGGCGATTATCTGGCCTTGGCCCGCACACTGCCAGGATACGGA
GATGTCGTCTTTCCCCACTGCTCCTGTGATAGTCGCAAGGAGGGACACGT
TGTGCCCGCCGTGGGCATGAAGAGCTTTCGGCTGCACGCCTGCCGTGAGG
ATGGCTCGCTGGAGGCGCAAATGGTCGAGCTGACCTGGGACAGCATTACG
CGCTCCGAGAGCGACGAGGAGTCCATGTCATTCTGCTTTCAGTACAATCG
TCCAGATAAGCCAGCACGTTGGGTCAAAGTCTACACGCCATATCATGCAT
TCCTTGCGGACTGCTTTGATCGCATCATGGAGGAGCGCAAGTGGGAAGAC
AGCGGCGACGCAAGCTTTCTAGACCAT
BO20350.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32758-RA | 1596 | CG32758-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
| CG32758-RC | 1332 | CG32758-PC | 63..1329 | 343..1609 | 6335 | 100 | Plus |
| CG32758-RD | 1293 | CG32758-PD | 24..1290 | 343..1609 | 6335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32758-RA | 2904 | CG32758-RA | 608..2200 | 17..1609 | 7965 | 100 | Plus |
| CG32758-RC | 3273 | CG32758-RC | 112..1378 | 343..1609 | 6335 | 100 | Plus |
| CG32758-RD | 3596 | CG32758-RD | 73..1339 | 343..1609 | 6335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5722207..5723045 | 1365..527 | 4195 | 100 | Minus |
| X | 23542271 | X | 5737099..5737424 | 342..17 | 1630 | 100 | Minus |
| X | 23542271 | X | 5721962..5722141 | 1543..1364 | 900 | 100 | Minus |
| X | 23542271 | X | 5723259..5723362 | 446..343 | 520 | 100 | Minus |
| X | 23542271 | X | 5723114..5723198 | 528..444 | 425 | 100 | Minus |
| X | 23542271 | X | 5721631..5721696 | 1609..1544 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:23:17 has no hits.
BO20350.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:49 Download gff for
BO20350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32758-RA | 616..2208 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:08 Download gff for
BO20350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32758-RA | 608..2200 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:24 Download gff for
BO20350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32758-RA | 608..2200 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:24 Download gff for
BO20350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5721629..5721696 | 1544..1611 | 97 | <- | Minus |
| X | 5721962..5722140 | 1365..1543 | 100 | <- | Minus |
| X | 5722208..5723043 | 529..1364 | 100 | <- | Minus |
| X | 5723114..5723196 | 446..528 | 100 | <- | Minus |
| X | 5723260..5723362 | 343..445 | 100 | <- | Minus |
| X | 5737099..5737424 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:08 Download gff for
BO20350.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5615662..5615729 | 1544..1611 | 97 | <- | Minus |
| arm_X | 5615995..5616173 | 1365..1543 | 100 | <- | Minus |
| arm_X | 5616241..5617076 | 529..1364 | 100 | <- | Minus |
| arm_X | 5617147..5617229 | 446..528 | 100 | <- | Minus |
| arm_X | 5617293..5617395 | 343..445 | 100 | <- | Minus |
| arm_X | 5631132..5631457 | 17..342 | 100 | | Minus |
BO20350.pep Sequence
Translation from 16 to 1627
> BO20350.pep
MSIVGENHPLPTPTPASAVVTASSGGGGGGAVVMGVGVGVTTANGPRVVT
IYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEKAGI
KKGDRILEVNGVSVEGATHKQVVDLIKSGGDCLTLTVISVTQQEADRLEP
QEDQSGYSYIDYSDKRSLPISIPDYGIVNRNGERYIVFNIHMAGRQLCSR
RYREFANLHSLLRKEFSGFNFPKLPGKWPFQLSEQQLDTRRRGLEQYLEK
VCAVRVIAESDAVQDFLTDTEDDISASPVDIKVMLPDHEVSTVSVKKSSN
AQVVWEILVQRANLTAYTQQYFYLFEIVEYNFERKLQPHEIPHQLYVQNY
STASSTCLCVRRWLFSVAKELTLPDGEQAGRFIFYQAVDEVNRGNIRADG
RLYELKALQDAKKAGDYLALARTLPGYGDVVFPHCSCDSRKEGHVVPAVG
MKSFRLHACREDGSLEAQMVELTWDSITRSESDEESMSFCFQYNRPDKPA
RWVKVYTPYHAFLADCFDRIMEERKWEDSGDASFLDH
BO20350.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32758-PA | 531 | CG32758-PA | 1..531 | 1..531 | 2779 | 100 | Plus |
| CG32758-PC | 443 | CG32758-PC | 22..443 | 110..531 | 2227 | 100 | Plus |
| CG32758-PD | 430 | CG32758-PD | 9..430 | 110..531 | 2227 | 100 | Plus |
| CG5734-PA | 490 | CG5734-PA | 9..385 | 171..523 | 219 | 23.9 | Plus |
| Prosap-PE | 1660 | CG30483-PE | 493..588 | 44..139 | 181 | 37.5 | Plus |
