BO20375.complete Sequence
2806 bp assembled on 2010-10-20
GenBank Submission: KX797960
> BO20375.complete
GAAGTTATCAGTCGACATGCATCGTTCGCTGAAGCCGCATGCATCCACCG
CACAGGCTAAGAAGGTGCAACCGCCAACGATACCAGGCGACTCGCCGCAG
GATTTGCATCTCTATCAGCAGCCGCAGCAGCTTCACCACCACCACCATCA
ACACCCAAACCATCATCATCCGCACCACCAGCCATCGATACCGCTCTATC
GGCTAAGCGGACCACTGCGCCATCATCAAAACCACCAGGCGGACGATGGG
ATCAGCATGAGCGGCAGCAGCATCGTTTCGTCGCCCTCGCTGGAGGAGGG
TGGCTTCAATTTGCCGCGGGAGACGAGTGTGGCCCTGCGTCTTAAGGATG
AAGTGGGTGGCACTTCAACGGCAGCCCCAACCACTGGCGGCCCAGGAGGA
GGTGGAGCGACGGTGGTGGGAGCACCACCACCCGGTGCCGGAAAGCCCGG
CGTAGCCATGGTTCCACCGCCACCCGTTTTCTGTGCCACTTTGCGCGAAC
CGCTGACCCACAAAGCGGCCGTCTACTACCACCAACAGCTGGCCCTGCAG
GAGGATCAGGGCATCGATCTAACCCAATCGCCTGGCCGAGACTCGCCGGG
CTCGTCGTCGGGCTCGGCGGGCTCTGGATCTCGTCACAGCACCGCCAGCT
TGGACTCGGGTCGGGCCTCCTCCTACCTGACGGGCGTGTCCTCGTCGGGC
GCCTCGATTCGTGCTCCGCTCTCCTCGCCGCGCTGCAGTTCCGTCAGCTC
GTGCTCCATTGGCAGTGTGGATCGGCAGCGCAACGATGAGCTCATCATCG
ACTGGCTGCTCGAGATGAAGCACGAGGAGTACGCGCAGCTGTTCATCGCC
GCGGGCTATGATCTGCCCACCATTGCGCGCATGACGCCGGAGGATCTCAC
CGCCATTGGCATTAAGAATCCGCATCATCGGGAGCGGATCAAGCAGCGGA
TCGACAAGCTGCAGGTGCTCGACAATTTGCCGCATTTCGTGCCGGGATCC
ATAGAGGAATGGCTGCAGCTGCTGCGTCTGGAGGAGTATATACAGCCCCT
GCTGGAGCAGAACTATAAGACGGTGCGCGACGTAACCCAAGTGACTTGGG
AGGATCTCGAGGACATTGGCATTGTCAAGCTGGGCCACCAAAAGAAAATT
CTGCTGGCCATCAAGCGTGTGAAGGACATAATTAGCGGAAAGTGGAACCC
AGGCGGCGCCAATGCCTACCAACAGCAGGAGTACCAGCGGAAGCCCTGGC
AATTCAATGTGCCCATACCCAGTACGCCATCCTATGTGCCAACCACCCGC
GTCTCGTGGGACGACACGAAAATCTACGCGACCAGCAGTGTCTTGAATTC
CACTGCCCCATCCGGGAGCAGCTGCCTCAATAGCAGCCTTGCCAACGGAG
ATGCCTACTACTGCACGGGCAGTAACCATGAGTGCTGCTCGGGCAACGAT
GTGGTGCTCATTAAGGTTCGCCAGCCGCGCGGCAAGAGCCTGGAATCTTT
GGAGGACATCCACGACAACAGCACGCGCAGCCATCTGACCTTCAGCCATT
ACACAACCACGGACTACGGCCACTTTGGGCCGCCGACAACAGCGGCGGCT
GCAGCGGCAATGGCCGCAGCGGCCACACTGCAGCAGCAGCATCATCACCA
GCAGCTGCTCCACCAGCAACAGCAGCAGGCAGCTGCCGCCCGTCTCCTGG
GCAACAATGCGCCTGGCATTGGATGGCGGCGATCCTACGACGACGGCGAC
ATCACACCCACCAACGATGCCACGAGGGAGCTGCTCTACGAGCAGGAGGG
CGGCGGAACTCTGCCACGCCAGCAGCGTGGCATCCTGCAGCGGGCGGTGT
TGAACACCATGCCGCCACTGGAGCACCATCACTACATGAATGCAGCGGCT
GCGGCGGAGTACGGTGCGGCCAGCGGTGTGGAGGGTGGAGCGAATTACAT
GGGCGGCAGTCCTTTGACGGGCAAGAAAATAGCTCCTGAGCCACCTAGAC
GCCACTGCAGCATACGCAACTCCCGCACGCTGAGCGGAGAGGGAGTGCCG
TCGGGAGCGGCTGCGCAGGCGCATCAGCAGGCAGCCCAACAGCAGCAGGG
CCAGCACATGTTCTACGGCCACACGGCGCAGCACTGGCAGCAGCAGCAGC
AGCAGGCGGGTGCAGGTACTGGTCAGCAGCCGATCTACGCCAACTATGCC
ACCATACAACAGACAACGGCGGAGATACACTGTGAGAAGTATCACGACAG
TAAGTCGACTTCCAGCATCGATTCGATTGACACGATACCATTTGCCAACG
AGAACACTGGGACGATAAAACAGCGGCTGCTCAACCGCCAGGAGCTGCAG
GGCGGCGGAGCGGGCAACAACAATGTACCCGGCGGCGGCCATCCCGCACA
CCTGCACTCCTCCAGCTCGAGCTCCAGCTCCTCCTCCACGAACACCATCG
CGAATATAGCGCACTCGTTCCATTCGTTGAAATCTTCCAGTTCGCTGCAC
GATGCCACATTGGCGCGGAGTGAAAGCATGGGCAGCACAGCCAGCGGTGG
AAGTGCCTTGCACCTGCGTTCACCCACATTGGATATGTCAAATGCCGGTG
GATCAACGGCGGAGCCTGCAAGTTCGCCAGAAGCAGCCGTACCAACTGTG
GCCATAAACAACGGCGTTCCGCCCAAAGTTTCGGTGAACGTTCTGAACGA
CATTGGCAATATGCTGGCCAATCTCACGGACGAGCTGGACGCCATGCTGG
AGGAGGAGAAGCGAGTGGGCCTAAACATAGACAGTGAAGCAAGCTTTCTA
GACCAT
BO20375.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ckn-RE | 2775 | CG12424-PE | 1..2772 | 17..2788 | 13860 | 100 | Plus |
| ckn-RB | 2775 | CG12424-PB | 1..2772 | 17..2788 | 13860 | 100 | Plus |
| ckn-RC | 2775 | CG12424-PC | 1..2772 | 17..2788 | 13860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ckn-RE | 4568 | CG12424-RE | 683..3455 | 16..2788 | 13865 | 100 | Plus |
| ckn-RB | 4039 | CG12424-RB | 365..3137 | 16..2788 | 13865 | 100 | Plus |
| ckn-RC | 4357 | CG12424-RC | 683..3455 | 16..2788 | 13865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14971778..14972757 | 16..995 | 4900 | 100 | Plus |
| 2R | 25286936 | 2R | 14978836..14979682 | 1942..2788 | 4235 | 100 | Plus |
| 2R | 25286936 | 2R | 14978228..14978706 | 1464..1942 | 2395 | 100 | Plus |
| 2R | 25286936 | 2R | 14977684..14977925 | 1226..1467 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 14977239..14977474 | 994..1229 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:21:58 has no hits.
BO20375.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:33 Download gff for
BO20375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12424-RB | 370..3141 | 17..2790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:08 Download gff for
BO20375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckn-RC | 684..3455 | 17..2790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:46 Download gff for
BO20375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckn-RC | 684..3455 | 17..2790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:46 Download gff for
BO20375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14971779..14972756 | 17..994 | 100 | -> | Plus |
| 2R | 14977240..14977473 | 995..1228 | 100 | -> | Plus |
| 2R | 14977687..14977923 | 1229..1465 | 100 | -> | Plus |
| 2R | 14978230..14978706 | 1466..1942 | 100 | -> | Plus |
| 2R | 14978837..14979682 | 1943..2790 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:08 Download gff for
BO20375.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10859284..10860261 | 17..994 | 100 | -> | Plus |
| arm_2R | 10864745..10864978 | 995..1228 | 100 | -> | Plus |
| arm_2R | 10865192..10865428 | 1229..1465 | 100 | -> | Plus |
| arm_2R | 10865735..10866211 | 1466..1942 | 100 | -> | Plus |
| arm_2R | 10866342..10867187 | 1943..2790 | 99 | | Plus |
BO20375.pep Sequence
Translation from 16 to 2806
> BO20375.pep
MHRSLKPHASTAQAKKVQPPTIPGDSPQDLHLYQQPQQLHHHHHQHPNHH
HPHHQPSIPLYRLSGPLRHHQNHQADDGISMSGSSIVSSPSLEEGGFNLP
RETSVALRLKDEVGGTSTAAPTTGGPGGGGATVVGAPPPGAGKPGVAMVP
PPPVFCATLREPLTHKAAVYYHQQLALQEDQGIDLTQSPGRDSPGSSSGS
AGSGSRHSTASLDSGRASSYLTGVSSSGASIRAPLSSPRCSSVSSCSIGS
VDRQRNDELIIDWLLEMKHEEYAQLFIAAGYDLPTIARMTPEDLTAIGIK
NPHHRERIKQRIDKLQVLDNLPHFVPGSIEEWLQLLRLEEYIQPLLEQNY
KTVRDVTQVTWEDLEDIGIVKLGHQKKILLAIKRVKDIISGKWNPGGANA
YQQQEYQRKPWQFNVPIPSTPSYVPTTRVSWDDTKIYATSSVLNSTAPSG
SSCLNSSLANGDAYYCTGSNHECCSGNDVVLIKVRQPRGKSLESLEDIHD
NSTRSHLTFSHYTTTDYGHFGPPTTAAAAAAMAAAATLQQQHHHQQLLHQ
QQQQAAAARLLGNNAPGIGWRRSYDDGDITPTNDATRELLYEQEGGGTLP
RQQRGILQRAVLNTMPPLEHHHYMNAAAAAEYGAASGVEGGANYMGGSPL
TGKKIAPEPPRRHCSIRNSRTLSGEGVPSGAAAQAHQQAAQQQQGQHMFY
GHTAQHWQQQQQQAGAGTGQQPIYANYATIQQTTAEIHCEKYHDSKSTSS
IDSIDTIPFANENTGTIKQRLLNRQELQGGGAGNNNVPGGGHPAHLHSSS
SSSSSSSTNTIANIAHSFHSLKSSSSLHDATLARSESMGSTASGGSALHL
RSPTLDMSNAGGSTAEPASSPEAAVPTVAINNGVPPKVSVNVLNDIGNML
ANLTDELDAMLEEEKRVGLNIDSEASFLDH
BO20375.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ckn-PE | 924 | CG12424-PE | 1..924 | 1..924 | 4867 | 100 | Plus |
| ckn-PB | 924 | CG12424-PB | 1..924 | 1..924 | 4867 | 100 | Plus |
| ckn-PC | 924 | CG12424-PC | 1..924 | 1..924 | 4867 | 100 | Plus |
| ckn-PD | 845 | CG12424-PD | 1..845 | 1..924 | 3348 | 74.2 | Plus |
| ckn-PF | 642 | CG12424-PF | 45..642 | 327..924 | 3133 | 100 | Plus |
