BO20405.complete Sequence
1243 bp assembled on 2009-05-13
GenBank Submission: KX797992
> BO20405.complete
GAAGTTATCAGTCGACATGCGCTTTCTTGTTCTCTCAACACTGCTTCTGG
CCTCTTTGGCACTTGGCCAGGCTCAACAGCACGGTGGGCTGGCCGTCGAA
CACAGATCGAGGTCGGCTCCGCTGGTCTTCGAGGAGCATCCTTACTACGG
AGGATTGAGGGGTCAGCTTCTCCAGCTGCGTCCGCAGCGGGACGGCAGTG
TGGGCAGCTTCATCCTGCAGCGCCAACAGCCGCAGTTGAGGGCTGTACCT
AGAGACTCCGATGACACCATCACCATTTCGGCCGCAAGCATCTCGGCGGT
AGCTGATGCTAGTGGAGCTTCTAGCTCCAGCAGCTCGATCTCAGCCAGCG
CCAGTGATTTCAATCGGATTCAGTCGGCCGCCGCTCGGTTGGTTGCCATT
CAGGAGTTGGCCAAGCGCAAGGGTTCCTTCAGTGAGGAGGACAACAAGAT
CTATGCCAGCAGCTTACTGGAACTGGGCCAGGCTGCCCAGAGTTTGGCCA
TGCTCCAGCAAAGCGGACAGATTAAGGACTTTAGTGTTCTGCTGCAGCCG
GACATGTTTGGCAATCCTCAAAAGCAGCCAGCCAATTTCGGGCTAGAGGC
CACCAACAATCCGGCGGACCAGAAGATCGACGAACAGAAACTGGACGAGG
TCACTGAGCAACAATTCTCGCCGGATGAGCAGTTCCTGCCCCCCAACAAC
GAGGATCCCTATGAGGATGTTAACGATAGTGTGTCCGTAATGGCTCCTAA
GAAAGATGCCGCCGTGGCTGAGGCAAAACCAGTGGGTCTTTCGATTGCCG
GTGAAGGTGGCGTGGCCTCCTCAAAACCGAACGCTGTGGCTCTCTCCGGC
CGGAATGGATTGGCCGTAGCTTCGCCCAAGGCCACAGCCATTGCTGGAGT
TTCTCCCGAGGAGGCAGCTGCCTTCAGCATTTCATTGCCCACTCGCAATC
AACTGGTGATCAAGAGTCCCAATTTGGCTTCGGAGAAGGCTAGCGAAGAC
TATGACTATAATGATGTACCGCTGACGGTTGCCCGCTTTCCTCTGACCCG
GGAAACTCCTCAGCAATTGGTCCCGGTTCGCATCTCTGGAGGGGATTCCC
TTGTGGAAAGGTGGCGCACCGCCATCGCAGAGGATTATGCAGCCAGGCAG
GCGCTGACCAAGGTGGCCATGCCGCATCCCACACCCTTCATCCGCATGGC
TCCCAAACTGCGTCTTCACTCCGAAGCAAGCTTTCTAGACCAT
BO20405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RI | 1212 | CG11905-PI | 1..1209 | 17..1225 | 6030 | 99.9 | Plus |
| CG11905-RF | 1212 | CG11905-PF | 1..1209 | 17..1225 | 6030 | 99.9 | Plus |
| CG11905-RB | 1212 | CG11905-PB | 1..1209 | 17..1225 | 6030 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RI | 1614 | CG11905-RI | 270..1478 | 17..1225 | 6030 | 99.9 | Plus |
| CG11905-RF | 1673 | CG11905-RF | 329..1537 | 17..1225 | 6030 | 99.9 | Plus |
| CG11905-RB | 1491 | CG11905-RB | 147..1355 | 17..1225 | 6030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16929020..16929707 | 787..100 | 3440 | 100 | Minus |
| 3L | 28110227 | 3L | 16928517..16928957 | 1225..785 | 2205 | 100 | Minus |
| 3L | 28110227 | 3L | 16933293..16933360 | 99..32 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:58:41 has no hits.
BO20405.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:27 Download gff for
BO20405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RI | 266..1474 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:58 Download gff for
BO20405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RB | 147..1355 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:19 Download gff for
BO20405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RB | 147..1355 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:19 Download gff for
BO20405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16928515..16928956 | 786..1227 | 99 | <- | Minus |
| 3L | 16929022..16929707 | 100..785 | 100 | <- | Minus |
| 3L | 16933293..16933360 | 32..99 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:58 Download gff for
BO20405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16921615..16922056 | 786..1227 | 99 | <- | Minus |
| arm_3L | 16922122..16922807 | 100..785 | 100 | <- | Minus |
| arm_3L | 16926393..16926460 | 32..99 | 98 | <- | Minus |
BO20405.pep Sequence
Translation from 16 to 1243
> BO20405.pep
MRFLVLSTLLLASLALGQAQQHGGLAVEHRSRSAPLVFEEHPYYGGLRGQ
LLQLRPQRDGSVGSFILQRQQPQLRAVPRDSDDTITISAASISAVADASG
ASSSSSSISASASDFNRIQSAAARLVAIQELAKRKGSFSEEDNKIYASSL
LELGQAAQSLAMLQQSGQIKDFSVLLQPDMFGNPQKQPANFGLEATNNPA
DQKIDEQKLDEVTEQQFSPDEQFLPPNNEDPYEDVNDSVSVMAPKKDAAV
AEAKPVGLSIAGEGGVASSKPNAVALSGRNGLAVASPKATAIAGVSPEEA
AAFSISLPTRNQLVIKSPNLASEKASEDYDYNDVPLTVARFPLTRETPQQ
LVPVRISGGDSLVERWRTAIAEDYAARQALTKVAMPHPTPFIRMAPKLRL
HSEASFLDH
BO20405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-PI | 403 | CG11905-PI | 1..403 | 1..403 | 1998 | 100 | Plus |
| CG11905-PF | 403 | CG11905-PF | 1..403 | 1..403 | 1998 | 100 | Plus |
| CG11905-PB | 403 | CG11905-PB | 1..403 | 1..403 | 1998 | 100 | Plus |
| CG11905-PL | 404 | CG11905-PL | 1..404 | 1..403 | 1983 | 99.5 | Plus |
