BO20408.complete Sequence
1336 bp assembled on 2010-11-19
GenBank Submission: KX796361
> BO20408.complete
GAAGTTATCAGTCGACATGGACAAGCGATCGTTGTGCCTGCTGCTCATCT
GCATCAATCTGTGCCTGGTCATCTGGCTGGTCAGTGTGCAGCAGTTGCCG
ATGCTGGAAGCGGAAATCATCGCCGATTTTAGCGGAAGTGGCGGCATTAG
CAGCAGCAGCACCGCACAGCCGCCAACGAGTGCCAAAAGTGGATTGCGGA
GGAGCAGGAGCCAACCAAACCAAATACACCAGCCTAGTCGCACACCTAGT
AATAGTAATGATAGTAGCCTAGTTAGCAACACATTCGATAACCACCCCAT
GGGCACGCCCCCCACTTTGGCGTCACAAACGCCCACGCCGCCACAGAGCA
GCATGCACCTCATGGATCTGCCCAATTTCGTCTATCTAATAGACCAGCCC
GCCTGTGATAAGGATGTCCGGGCACTGATATTGGTCCATTCGGCAGTGCG
CAATATCGAAAAGCGCCGGATAATCCGAGAAACGTGGGCGAATCGGAGCT
ATATAGACCAGACGCCGCTGAAGGTTTACTTCCTGGTGGGCGGGGTGAGC
GCTAAGAGCGAGAAGTGGCAGCAGTTCCTGGGACGCGAGAACCACCTGCA
CGGCGATCTCATCCAGGGTAACTTCAAAGACGCCTATCGCAACATGACCT
ACAAGCATGTCATGGCTCTCAAGTGGTTCAACGAGAAGTGTGCGCATGCC
CAGCTGCTGGTGAAGGTGGACGACGATGTGTTTATGAACACACCGCAGCT
GGTCAAGTACTTGGCGACACCCTCTCTGCCAGAGTACTCCATGCTCCGGG
ATCCCAATCTGATGCTCTGTCGATCCGTCCATCATTCGAGGGTCAAGCGT
TCATATCGTTCCAAATGGCGGGTGACCTACAAGGAGTACCCGAATCGTTT
CTATCCGGAATACTGTCCCGGAATGGCCATTGTCTACGCACCGGAAGTGG
TGCGTCGCCTGTACGAGGCGGCCCAGAAGTCCAAATACTTCTGGGTAGAC
GATGTACTCATCACGGGGATCCTGGCCGAGGAAACGGGCAGTAAGATCAC
CCCGCTGCAGCATTACCTCGAGCAGAAGGACGTTCGCAAGCTGGTCGGCG
GGGAAGCTGATCTTGAGGATCCCCCGTTCCTCTTCACAAATCACGCCATT
AAGCCAGACGAAAGCATGACCATTTGGCAGATGGCGCTGGACAGAATGCA
GAGGCCACTGCTCACACAACCCGCCTACTCATCCGCATCCTCCGCTTCCA
GATCCGCACCCGTTGCGCCAAGTGCCAACATTTCCGAGGTGGCCCAGACG
AGCTCCACCGGCCTCAGCGCAAGCTTTCTAGACCAT
BO20408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11357-RD | 1305 | CG11357-PD | 1..1302 | 17..1318 | 6510 | 100 | Plus |
| CG11357-RC | 1305 | CG11357-PC | 1..1302 | 17..1318 | 6510 | 100 | Plus |
| CG11357-RB | 1305 | CG11357-PB | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11357-RD | 2611 | CG11357-RD | 416..1717 | 17..1318 | 6510 | 100 | Plus |
| CG11357-RC | 3080 | CG11357-RC | 885..2186 | 17..1318 | 6510 | 100 | Plus |
| CG11357-RB | 2326 | CG11357-RB | 131..1432 | 17..1318 | 6510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4551098..4551940 | 17..859 | 4215 | 100 | Plus |
| 3L | 28110227 | 3L | 4552105..4552563 | 860..1318 | 2295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:35:03 has no hits.
BO20408.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-19 09:48:52 Download gff for
BO20408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11357-RC | 876..2177 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:15 Download gff for
BO20408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11357-RB | 131..1432 | 17..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:12 Download gff for
BO20408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11357-RB | 131..1432 | 17..1320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:12 Download gff for
BO20408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4551098..4551940 | 17..859 | 100 | -> | Plus |
| 3L | 4552105..4552563 | 860..1320 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:15 Download gff for
BO20408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4551098..4551940 | 17..859 | 100 | -> | Plus |
| arm_3L | 4552105..4552563 | 860..1320 | 99 | | Plus |
BO20408.pep Sequence
Translation from 16 to 1336
> BO20408.pep
MDKRSLCLLLICINLCLVIWLVSVQQLPMLEAEIIADFSGSGGISSSSTA
QPPTSAKSGLRRSRSQPNQIHQPSRTPSNSNDSSLVSNTFDNHPMGTPPT
LASQTPTPPQSSMHLMDLPNFVYLIDQPACDKDVRALILVHSAVRNIEKR
RIIRETWANRSYIDQTPLKVYFLVGGVSAKSEKWQQFLGRENHLHGDLIQ
GNFKDAYRNMTYKHVMALKWFNEKCAHAQLLVKVDDDVFMNTPQLVKYLA
TPSLPEYSMLRDPNLMLCRSVHHSRVKRSYRSKWRVTYKEYPNRFYPEYC
PGMAIVYAPEVVRRLYEAAQKSKYFWVDDVLITGILAEETGSKITPLQHY
LEQKDVRKLVGGEADLEDPPFLFTNHAIKPDESMTIWQMALDRMQRPLLT
QPAYSSASSASRSAPVAPSANISEVAQTSSTGLSASFLDH
BO20408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11357-PD | 434 | CG11357-PD | 1..434 | 1..434 | 2273 | 100 | Plus |
| CG11357-PC | 434 | CG11357-PC | 1..434 | 1..434 | 2273 | 100 | Plus |
| CG11357-PB | 434 | CG11357-PB | 1..434 | 1..434 | 2273 | 100 | Plus |
| CG11357-PA | 434 | CG11357-PA | 1..434 | 1..434 | 2273 | 100 | Plus |
| CG3038-PB | 358 | CG3038-PB | 16..263 | 99..341 | 319 | 30.3 | Plus |
