Clone BO20412 Report

Search the DGRC for BO20412

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:204
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG15201-RA
Protein status:BO20412.pep: Imported from assembly
Sequenced Size:373

Clone Sequence Records

BO20412.complete Sequence

373 bp assembled on 2009-05-13

GenBank Submission: KX795284

> BO20412.complete
GAAGTTATCAGTCGACATGCACAACCGTTGCGGATCCATTTGGCTGCTGG
CGGCCGTCCTGCTGCTGCTGGCGCTCCTGCTTCCGCAGGCACTGCTGCCT
ACCGTCGATGCGGCCAGCGAACCCGTGTGCTCCTACCGCAACTCGGAGGA
TGAGACCATCTTTCTCAAGTATCTGCCGCTGCTGAGACGCGGACAGGACT
ACGTGGACTTCGGCAAGGATGGCAAGTGCCTCAAGCGGGCCATCTGCACG
GACACCTTCAAGACCATCGTGGAGGACTGTGGACAGCAGAAGGTCACCTG
CGGCAACAAGGATCGCTTCACCGGAGTTTTCCCTGCCTGCTGCCTCAAGT
GTCCCGCAAGCTTTCTAGACCAT

BO20412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15201-RA 342 CG15201-PA 1..339 17..355 1695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15201-RA 489 CG15201-RA 34..372 17..355 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11144319..11144482 113..276 820 100 Plus
X 23542271 X 11144153..11144249 17..113 485 100 Plus
X 23542271 X 11144614..11144692 277..355 395 100 Plus
Blast to na_te.dros performed 2014-11-27 16:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1602 97..28 114 65.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2394 97..27 109 63.4 Minus
roo 9092 roo DM_ROO 9092bp 1064..1129 88..25 109 65.2 Minus
roo 9092 roo DM_ROO 9092bp 1057..1168 148..38 107 57.5 Minus

BO20412.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:16 Download gff for BO20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG15201-RA 34..372 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:21 Download gff for BO20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG15201-RA 34..372 17..357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:06 Download gff for BO20412.complete
Subject Subject Range Query Range Percent Splice Strand
CG15201-RA 34..372 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:06 Download gff for BO20412.complete
Subject Subject Range Query Range Percent Splice Strand
X 11144153..11144249 17..113 100 -> Plus
X 11144320..11144482 114..276 100 -> Plus
X 11144614..11144692 277..357 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:21 Download gff for BO20412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11038186..11038282 17..113 100 -> Plus
arm_X 11038353..11038515 114..276 100 -> Plus
arm_X 11038647..11038725 277..357 97   Plus

BO20412.pep Sequence

Translation from 16 to 373

> BO20412.pep
MHNRCGSIWLLAAVLLLLALLLPQALLPTVDAASEPVCSYRNSEDETIFL
KYLPLLRRGQDYVDFGKDGKCLKRAICTDTFKTIVEDCGQQKVTCGNKDR
FTGVFPACCLKCPASFLDH

BO20412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15201-PA 113 CG15201-PA 1..113 1..113 611 100 Plus