BO20438.complete Sequence
2041 bp assembled on 2010-10-20
GenBank Submission: KX798693
> BO20438.complete
GAAGTTATCAGTCGACATGACCCTCCTGTCGAACATTCTCGACTGCGGAG
GCTGTATTTCCGCCCAGCGCTTCACCCGCCTGCTGCGCCAGTCCGGCTCA
TCAGGACCATCCCCATCTGCACCGACGGCCGGAACATTTGAATCAAAATC
CATGCTGGAGCCAACATCCTCGCACAGCCTGGCGACCGGACGCGTGCCAC
TACTGCACGATTTCGATGCCTCGACAACGGAATCGCCGGGAACGTATGTC
CTCGACGGTGTCGCCAGGGTGGCCCAATTGGCCCTGGAGCCCACCGTCAT
GGACGCACTGCCCGATTCGGACACGGAACAGGTTCTCGGTAATCTCAACA
GCAGCGCGCCCTGGAATCTAACGCTTGCGTCGGCAGCGGCCACCAATTTC
GAGAACTGCTCGGCGCTTTTTGTCAATTACACCCTACCACAAACAGGACT
CTACTGCAATTGGACCTGGGACACATTGCTCTGCTGGCCACCCACTCCGG
CTGGAGTCCTTGCACGGATGAATTGTCCTGGCGGCTTTCATGGCGTAGAT
ACGCGCAAATTCGCCATCCGAAAGTGTGAGCTGGATGGTCGATGGGGCAG
CAGGCCAAATGCCACGGAGGTGAATCCGCCGGGATGGACGGACTACGGGC
CGTGTTACAAGCCGGAGATTATCCGTCTCATGCAGCAGATGGGCAGCAAG
GACTTCGATGCCTACATAGACATTGCCAGGAGGACTCGAACCCTGGAGAT
CGTGGGCCTCTGCCTCTCCCTGTTCGCCCTTATAGTTTCCCTGCTGATCT
TCTGCACATTTCGCTCGCTGCGAAACAATCGCACCAAGATCCACAAGAAT
CTTTTCGTCGCCATGGTGCTGCAGGTGATCATTCGCCTGACCTTGTATCT
CGACCAATTCCGGCGGGGAAACAAGGAGGCGGCCACCAACACGAGTCTCT
CTGTCATTGAGAACACGCCCTATTTGTGCGAAGCATCCTATGTACTTCTG
GAGTACGCTCGTACCGCCATGTTCATGTGGATGTTCATCGAGGGCCTTTA
CCTGCACAACATGGTCACCGTGGCCGTTTTCCAGGGCAGCTTTCCCCTCA
AGTTCTTCTCGCGACTCGGCTGGTGTGTGCCCATTCTGATGACCACCGTG
TGGGCGAGATGCACGGTCATGTATATGGACACCTCGCTGGGCGAATGCTT
GTGGAACTATAATCTCACGCCCTACTACTGGATCCTCGAGGGGCCACGAC
TAGCGGTCATACTGCTAAACTTCTGTTTCCTGGTGAACATTATCCGAGTG
CTGGTAATGAAGCTGCGTCAATCGCAGGCCAGCGATATAGAACAGACTCG
CAAGGCAGTTAGAGCGGCTATAGTCCTACTACCACTTTTGGGTATAACCA
ATCTCCTGCACCAGCTGGCTCCTCTGAAAACGGCCACGAACTTCGCGGTC
TGGTCGTATGGCACCCACTTTCTCACCTCGTTTCAGGGATTTTTTATAGC
GCTAATTTACTGCTTTCTAAATGGCGAGGTTCGTGCCGTGCTACTAAAGA
GTCTGGCCACCCAGCTGTCGGTGCGAGGTCATCCGGAATGGGCGCCGAAA
AGGGCATCTATGTACTCGGGTGCTTATAACACGGCGCCGGATACGGATGC
AGTGCAGCCTGCAGGAGATCCATCGGCCACTGGAAAGCGAATATCACCGC
CGAATAAAAGGCTGAATGGAAGAAAGCCGAGCAGTGCCAGCATTGTGATG
ATTCACGAGCCTCAACAGCGCCAGCGACTGATGCCCCGGCTGCAAAACAA
GGCGCGGGAAAAGGGCAAGGACCGGGTGGAGAAGACGGATGCGGAAGCGG
AGCCGGATCCGACCATCTCCCACATTCACAGCAAGGAGGCGGGCAGCGCG
AGATCGCGAACTCGCGGCTCCAAGTGGATAATGGGCATCTGCTTCCGGGG
TCAAAAGGTACTAAGAGTACCGTCAGCGTCATCCGTGCCACCCGAGTCAG
TTGTATTTGAGTTGTCAGAGCAGGCAAGCTTTCTAGACCAT
BO20438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdfr-RB | 2217 | CG13758-PB | 208..2214 | 17..2023 | 10035 | 100 | Plus |
| Pdfr-RA | 2010 | CG13758-PA | 1..2007 | 17..2023 | 10035 | 100 | Plus |
| Pdfr-RD | 2175 | CG13758-PD | 1..1942 | 17..1958 | 9710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdfr-RB | 3230 | CG13758-RB | 669..2675 | 17..2023 | 10035 | 100 | Plus |
| Pdfr-RA | 2910 | CG13758-RA | 343..2349 | 17..2023 | 10035 | 100 | Plus |
| Pdfr-RD | 3239 | CG13758-RD | 251..2192 | 17..1958 | 9710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2573001..2573431 | 17..447 | 2155 | 100 | Plus |
| X | 23542271 | X | 2576116..2576450 | 1689..2023 | 1675 | 100 | Plus |
| X | 23542271 | X | 2575191..2575488 | 967..1264 | 1490 | 100 | Plus |
| X | 23542271 | X | 2575554..2575820 | 1264..1530 | 1335 | 100 | Plus |
| X | 23542271 | X | 2574863..2575120 | 710..967 | 1290 | 100 | Plus |
| X | 23542271 | X | 2575892..2576054 | 1527..1689 | 815 | 100 | Plus |
| X | 23542271 | X | 2574472..2574624 | 558..710 | 765 | 100 | Plus |
| X | 23542271 | X | 2573498..2573610 | 445..557 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:23:21 has no hits.
BO20438.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:43 Download gff for
BO20438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdfr-RA | 345..2351 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:27 Download gff for
BO20438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdfr-RA | 343..2349 | 17..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:13 Download gff for
BO20438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdfr-RA | 343..2349 | 17..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:13 Download gff for
BO20438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2574863..2575120 | 710..967 | 100 | -> | Plus |
| X | 2575192..2575488 | 968..1264 | 100 | -> | Plus |
| X | 2573001..2573430 | 17..446 | 100 | -> | Plus |
| X | 2573500..2573610 | 447..557 | 100 | -> | Plus |
| X | 2574472..2574623 | 558..709 | 100 | -> | Plus |
| X | 2575555..2575818 | 1265..1528 | 100 | -> | Plus |
| X | 2575894..2576054 | 1529..1689 | 100 | -> | Plus |
| X | 2576117..2576450 | 1690..2025 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:27 Download gff for
BO20438.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2467034..2467463 | 17..446 | 100 | -> | Plus |
| arm_X | 2467533..2467643 | 447..557 | 100 | -> | Plus |
| arm_X | 2468505..2468656 | 558..709 | 100 | -> | Plus |
| arm_X | 2468896..2469153 | 710..967 | 100 | -> | Plus |
| arm_X | 2469225..2469521 | 968..1264 | 100 | -> | Plus |
| arm_X | 2469588..2469851 | 1265..1528 | 100 | -> | Plus |
| arm_X | 2469927..2470087 | 1529..1689 | 100 | -> | Plus |
| arm_X | 2470150..2470483 | 1690..2025 | 99 | | Plus |
BO20438.pep Sequence
Translation from 16 to 2041
> BO20438.pep
MTLLSNILDCGGCISAQRFTRLLRQSGSSGPSPSAPTAGTFESKSMLEPT
SSHSLATGRVPLLHDFDASTTESPGTYVLDGVARVAQLALEPTVMDALPD
SDTEQVLGNLNSSAPWNLTLASAAATNFENCSALFVNYTLPQTGLYCNWT
WDTLLCWPPTPAGVLARMNCPGGFHGVDTRKFAIRKCELDGRWGSRPNAT
EVNPPGWTDYGPCYKPEIIRLMQQMGSKDFDAYIDIARRTRTLEIVGLCL
SLFALIVSLLIFCTFRSLRNNRTKIHKNLFVAMVLQVIIRLTLYLDQFRR
GNKEAATNTSLSVIENTPYLCEASYVLLEYARTAMFMWMFIEGLYLHNMV
TVAVFQGSFPLKFFSRLGWCVPILMTTVWARCTVMYMDTSLGECLWNYNL
TPYYWILEGPRLAVILLNFCFLVNIIRVLVMKLRQSQASDIEQTRKAVRA
AIVLLPLLGITNLLHQLAPLKTATNFAVWSYGTHFLTSFQGFFIALIYCF
LNGEVRAVLLKSLATQLSVRGHPEWAPKRASMYSGAYNTAPDTDAVQPAG
DPSATGKRISPPNKRLNGRKPSSASIVMIHEPQQRQRLMPRLQNKAREKG
KDRVEKTDAEAEPDPTISHIHSKEAGSARSRTRGSKWIMGICFRGQKVLR
VPSASSVPPESVVFELSEQASFLDH
BO20438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdfr-PB | 738 | CG13758-PB | 70..738 | 1..669 | 3513 | 100 | Plus |
| Pdfr-PA | 669 | CG13758-PA | 1..669 | 1..669 | 3513 | 100 | Plus |
| Pdfr-PD | 724 | CG13758-PD | 1..647 | 1..647 | 3409 | 100 | Plus |
| Pdfr-PC | 724 | CG13758-PC | 1..647 | 1..647 | 3409 | 100 | Plus |
| Dh44-R1-PA | 504 | CG8422-PA | 52..440 | 146..560 | 422 | 29.2 | Plus |
