Clone BO20494 Report

Search the DGRC for BO20494

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:204
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG12355-RA
Protein status:BO20494.pep: full length peptide match
Sequenced Size:307

Clone Sequence Records

BO20494.complete Sequence

307 bp assembled on 2009-05-13

GenBank Submission: KX796300

> BO20494.complete
GAAGTTATCAGTCGACATGTCCATCATGGAGGGCTCTGCGGATATTTTCC
TGGAACTCCGCGAAAAATTCGTGCCGACTTTTATGCGTTCCTGCATTTTC
TGGTTGCCCGCGCAGGCCTTGAACTTTTCCCTGGTTGCACCCCGATTCCG
TGTCATCTATATGGGTATTTGTGGATTGATTTGGGTGAATATTCTATGTT
GGACCAAGCGGCAAAGTCTTCCAGTCGCAACGAAAGAAATTGCAACTGAT
TCAAATAATAATGCAGCTGCCATAAGGAATTCCGAAACAGCAAGCTTTCT
AGACCAT

BO20494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12355-RE 615 CG12355-PE 339..612 16..289 1370 100 Plus
CG12355-RB 615 CG12355-PB 339..612 16..289 1370 100 Plus
CG12355-RD 276 CG12355-PD 1..273 17..289 1365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12355-RE 1026 CG12355-RE 661..934 16..289 1370 100 Plus
CG12355-RD 791 CG12355-RD 426..699 16..289 1370 100 Plus
CG12355-RB 817 CG12355-RB 452..725 16..289 1370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15493056..15493329 289..16 1370 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:35:56 has no hits.

BO20494.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:46 Download gff for BO20494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12355-RB 340..612 17..291 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:49 Download gff for BO20494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12355-RB 453..725 17..291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:50 Download gff for BO20494.complete
Subject Subject Range Query Range Percent Splice Strand
CG12355-RB 453..725 17..291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:50 Download gff for BO20494.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15493053..15493328 17..291 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:49 Download gff for BO20494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15486153..15486428 17..291 99   Minus

BO20494.pep Sequence

Translation from 16 to 307

> BO20494.pep
MSIMEGSADIFLELREKFVPTFMRSCIFWLPAQALNFSLVAPRFRVIYMG
ICGLIWVNILCWTKRQSLPVATKEIATDSNNNAAAIRNSETASFLDH

BO20494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12355-PD 91 CG12355-PD 1..91 1..91 474 100 Plus
CG12355-PA 91 CG12355-PA 1..91 1..91 474 100 Plus
CG12355-PE 204 CG12355-PE 114..204 1..91 474 100 Plus
CG12355-PB 204 CG12355-PB 114..204 1..91 474 100 Plus