BO20571.complete Sequence
3013 bp assembled on 2011-03-14
GenBank Submission: KX794011
> BO20571.complete
GAAGTTATCAGTCGACATGAAGGAGAACAACAAGATCCTCCAACTCATCT
ATGTGGCGTGGCGCGAGCGCTGGACGGACTCCCAGTGGGGCATCAACATA
AAAAAGGTGCTGCCGAGAGGAGTCAGTGGAGATGTATACAATCTGGCTGA
CTGTCTGATGCAGCAGGCACTCATTGGTTCCACGGCTAATCCGTTGGTTC
TTAACTACCTGAAGCATTCACTGTGCGCCCATCTCGTTTCTCACGCTGCT
GTTATTCGGTGCATTGCCAAATATGACAAATTAGAGCGCGTTTATTGCAT
TACAGCGCTCCTTGAATTCCTGGCCAGCATCGTGGATGGCGTTACCTGCC
GAATAAAATCTGAGGAAGCGGTTTTACCGAGTTCCGTCGTCCACTTGGTG
TACTGGCTGCTTCAAATCTTCGCCAGAACTGTGCAGCACTATGAACTGTA
TGGTGAGATTAGTGCTGAGCAATCATACATGCTGGACCAGACCTGCGTGG
TGATAGATCGGCTTAGCCAGCAGCAGTTCCTGCTGTCTATGCTGTACGTG
GGCTGTCACGAAGAGCTCGAAATATGTGGACGGATTCGGGATAAGTACGC
TACCATCAAGGGATCGTTGACGAACTCAAACTTTACGCTAAATGCACCAC
AAGTGGAGCAGCAATTGCAGCAGTTGGCCTTTATAGAAGCCAAGCATCTT
GAAATGCAACCACTTAATCCGCCGTCAACACTCGAGAAGATCTCGTGCTG
CGTGCAACCCTTACTGGCGGTGGAAGTGCTTCTCAATCCGTGCAAGGACA
CCAGCTACTACGTGGCTGAGTTGCAGATGCTGCAACGATTAAAGAAATAC
TCCAATACACGGCTCTTCTACGAAATCATCCGTGCTGGATTCCTCACGCT
GAGCAATGTTGCGGATACAAGTCCTGACACTATGTGGGGTGCCTTTATGT
TCTTTAAAATGCCGCACATCATTAAGCAATTGCACGCCCTGCAACGGATT
CCCGGGGAGCAACCACCACCGGCCGATTACATACCCGAGTTGGTGGAGGC
TTTGGAATTGCTCATCGAGGACAATCTGCTGCTAGACTTCATGGATACTA
AGTGCTCATGCAATATGATCGAGTTCCTTTTGAATGACTGGACCAAGCAA
CAACTAGTCAATGATGTCCACGTAAAGAAGTTCGCCAGTCAAAGGGAAGC
CGCCTCTCAATTACTCAAAAAATGCGACAATGGCCAACAGACACCCTCCA
ATATAAACTTCATCAAGCGCGCAGAGGTTCCGCTTTCCGGAGTACTAAAA
ACGCTGTGCACCAACAAGGTCCAGGACATGGTTAATGTCCTTTGCCAAGT
GCCGGTGGGCAACAGCTTCGAGTTGATTCTTTCAGTGGCTACCGTCGAGG
GACGCCTCAAGACATTCGTATCGCGTCTGATCCAGTGCAATGAGAACTCC
AAGCCGGTGCCGGGCGACCTGGGCAAGCTATGCGTCATCCGGTCCACTCT
GTTTGATGTTTCCTTCCTAATGTTGACAAGCATTGTGCAGACCTATGGAT
CCGATGTGGTCTTATCTGAGCGTGGTGACTCATTTTTTGAAAAATGGGTG
CGTGAGTGCATGGTGGAAAGGAATAAGCTTAAGAATCCGCGTCAAATTCT
TGCCCTCTGTGATGACAGTATTGTCGACGAGCTTTTGCTTAGCTTCAGTA
AACCAGAGGCATCACAACTTAAGCCAAACAACTTAAGTTGGCAGGAGACT
TGCCTTAATCTGCCCGGAGTGCTTCATCATGTGCTAATAGCTTGGGAGCA
GGAAACGCTATCCTCGGCGGACGTTAAAAGTATTCTGGACAATATTAAGA
GAAGACTTTTCAGTTTTTCCGTTTGCGCCACTAGTTTTCTATGCGCCTAC
ATGTATTCGGTGAAGGAAACGGAACTTCTGAAACCACTAAACATGATTCA
GCAGTTCCTGGCTCCGTTGACCAGCGAAGAGCTTTCCAGCCAGGAAAATG
CCAAGGAGCGACTAGCTCTCTCCTATCAGATTATCAGAAAAATGCAACAC
GATGTGCATCCTGCCCCAAGTACCAAGTCCCGCCTCATTTCACATTCCCC
GCTAGTCGAGCAGTTTCGGGAGGTGTGGCGAACAGTAGTCGATGCTGGTC
ACCTGCCCGTTCGCGCCGCTCAGTCGTTGGAGTCGCTTCTGCTAGCCGGT
GGCGCGGCGTGGCTGTCCACGCAGTTGGTGGAGCAACTGCTGGCCTGCAA
GTACACAAGGGATATGTCGCGAACCATGGACGTTGTGTTTGCCGTAATGC
ATCTCGACATTGAGAAGACCACTGAGGCGTTGCTCCAGTACGTGGTGGCT
CCACTGATACTGCGACGACAAGGTGAGGACATTAATGAGCCCCAATCCCT
GGTACTGGCCCGCCTCTGTGTTTACTGTATTATTTCCTGCCTGGAGAGCC
GCAAAGGAAATGGCACTTCCGCTTTGACGGCCATGAAGAAGCGATCGAGA
TCTCACGATGACGAGGAACTGGCGGCCAATGCAGCCAAAGTGCGCAAGGT
GATTGGCGATGGCAGCGACAACTCAAGCGACTTTACGGACACTACGACCG
GAGCTGGCCTGGCAGCATTATTGGGCTCCACTTCCACATCTGAACTGCGG
ACTACGCCGCTTACTCTAAGAGAACCACTGCAGACGAGCGTGCAGCACAT
TTTCGCAGTGTTCCTGCAGTTTGTCAGTGGAGATGAACTGTCGCCCAAGG
CCGTTTTTGTTTATCAGTTCATTTCGCTGCTGGTGGAATGCGGTGGTGAG
AGGGTCGCTCCCGTCCTGCGCTTGCTGCCCAACGGCCTGGTGCAACAGCT
CCTGAAAGTTTTGGTCACCGACGACATAAAAGTGGGTCTCATCAGCAGAC
TATACGATCTGCGAATCCAGGCAGGAAGACTGTCCGCTGTGTCTGATCTT
TGCCTGTGGCGAAATATGCAGATGGCCAGGCACAGCATTCATCTGGCAAG
CTTTCTAGACCAT
BO20571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED24-RA | 2982 | CG7999-PA | 1..2979 | 17..2995 | 14895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED24-RA | 3199 | CG7999-RA | 120..3098 | 17..2995 | 14895 | 100 | Plus |
| UbcE2M-RC | 1729 | CG7375-RC | 1104..1726 | 2995..2373 | 3115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8193561..8194405 | 351..1195 | 4225 | 100 | Plus |
| 3L | 28110227 | 3L | 8194890..8195707 | 1556..2373 | 4090 | 100 | Plus |
| 3L | 28110227 | 3L | 8195850..8196472 | 2373..2995 | 3115 | 100 | Plus |
| 3L | 28110227 | 3L | 8194470..8194834 | 1193..1557 | 1825 | 100 | Plus |
| 3L | 28110227 | 3L | 8193334..8193492 | 193..351 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 8191389..8191479 | 17..107 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 8193188..8193276 | 105..193 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:28:56 has no hits.
BO20571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:58:37 Download gff for
BO20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 118..3096 | 17..2997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:21 Download gff for
BO20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 120..3098 | 17..2997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:39 Download gff for
BO20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED24-RA | 120..3098 | 17..2997 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:39 Download gff for
BO20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8193190..8193276 | 107..193 | 100 | -> | Plus |
| 3L | 8193335..8193492 | 194..351 | 100 | -> | Plus |
| 3L | 8191389..8191478 | 17..106 | 100 | -> | Plus |
| 3L | 8193562..8194404 | 352..1194 | 100 | -> | Plus |
| 3L | 8194472..8194832 | 1195..1555 | 100 | -> | Plus |
| 3L | 8194890..8195707 | 1556..2373 | 100 | -> | Plus |
| 3L | 8195851..8196472 | 2374..2997 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:21 Download gff for
BO20571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8186290..8186376 | 107..193 | 100 | -> | Plus |
| arm_3L | 8186435..8186592 | 194..351 | 100 | -> | Plus |
| arm_3L | 8184489..8184578 | 17..106 | 100 | -> | Plus |
| arm_3L | 8186662..8187504 | 352..1194 | 100 | -> | Plus |
| arm_3L | 8187572..8187932 | 1195..1555 | 100 | -> | Plus |
| arm_3L | 8187990..8188807 | 1556..2373 | 100 | -> | Plus |
| arm_3L | 8188951..8189572 | 2374..2997 | 99 | | Plus |
BO20571.pep Sequence
Translation from 16 to 3013
> BO20571.pep
MKENNKILQLIYVAWRERWTDSQWGINIKKVLPRGVSGDVYNLADCLMQQ
ALIGSTANPLVLNYLKHSLCAHLVSHAAVIRCIAKYDKLERVYCITALLE
FLASIVDGVTCRIKSEEAVLPSSVVHLVYWLLQIFARTVQHYELYGEISA
EQSYMLDQTCVVIDRLSQQQFLLSMLYVGCHEELEICGRIRDKYATIKGS
LTNSNFTLNAPQVEQQLQQLAFIEAKHLEMQPLNPPSTLEKISCCVQPLL
AVEVLLNPCKDTSYYVAELQMLQRLKKYSNTRLFYEIIRAGFLTLSNVAD
TSPDTMWGAFMFFKMPHIIKQLHALQRIPGEQPPPADYIPELVEALELLI
EDNLLLDFMDTKCSCNMIEFLLNDWTKQQLVNDVHVKKFASQREAASQLL
KKCDNGQQTPSNINFIKRAEVPLSGVLKTLCTNKVQDMVNVLCQVPVGNS
FELILSVATVEGRLKTFVSRLIQCNENSKPVPGDLGKLCVIRSTLFDVSF
LMLTSIVQTYGSDVVLSERGDSFFEKWVRECMVERNKLKNPRQILALCDD
SIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAWEQETLSS
ADVKSILDNIKRRLFSFSVCATSFLCAYMYSVKETELLKPLNMIQQFLAP
LTSEELSSQENAKERLALSYQIIRKMQHDVHPAPSTKSRLISHSPLVEQF
REVWRTVVDAGHLPVRAAQSLESLLLAGGAAWLSTQLVEQLLACKYTRDM
SRTMDVVFAVMHLDIEKTTEALLQYVVAPLILRRQGEDINEPQSLVLARL
CVYCIISCLESRKGNGTSALTAMKKRSRSHDDEELAANAAKVRKVIGDGS
DNSSDFTDTTTGAGLAALLGSTSTSELRTTPLTLREPLQTSVQHIFAVFL
QFVSGDELSPKAVFVYQFISLLVECGGERVAPVLRLLPNGLVQQLLKVLV
TDDIKVGLISRLYDLRIQAGRLSAVSDLCLWRNMQMARHSIHLASFLDH
BO20571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED24-PA | 993 | CG7999-PA | 1..993 | 1..993 | 5075 | 100 | Plus |
