BO20573.complete Sequence
859 bp assembled on 2009-05-13
GenBank Submission: KX796364
> BO20573.complete
GAAGTTATCAGTCGACATGAAGACTGAGCTGCGTTCCTGCGCAGCGTGCG
GGGAACCCATCTCGGATCGGTTCTTCCTGGAGGTCGGCGGCTGCTCCTGG
CACGCCCACTGCCTCCGCTGCTGCATGTGCATGTGCCCCCTGGATCGCCA
GCAGTCCTGCTTCATCCGGGAGAGGCAGGTGTACTGCAAGGCCGACTACA
GCAAAAATTTCGGCGCCAAGTGCTCCAAGTGCTGTCGCGGCATCTCCGCC
TCGGATTGGGTGCGTCGGGCACGGGAGCTGGTCTTCCATCTAGCCTGCTT
TGCCTGCGACCAGTGTGGACGCCAGTTGTCCACCGGCGAGCAGTTCGCCC
TCATGGATGACCGGGTGCTCTGCAAGGCTCATTATCTGGAGACGGTCGAG
GGTGGCACCACATCGAGCGACGAGGGCTGTGATGGCGATGGTTATCACAA
GAGCAAGACGAAACGGGTGCGCACCACCTTCACCGAGGAGCAGTTGCAAG
TGCTGCAGGCCAACTTCCAGATTGACAGTAATCCGGATGGCCAGGATCTG
GAGCGGATCGCCTCGGTGACCGGTCTCAGCAAGCGTGTGACGCAAGTATG
GTTCCAGAACTCGCGGGCGCGTCAGAAAAAACACATACATGCTGGTAAGA
ATAAAATACGCGAACCGGAAGGAAGCTCATTTGCGCGTCATATTAACCTG
CAGTTAACGTATTCATTTCAGAATAACGCACAGAACCCAATGCATTTGAA
TGGCTCTAAAGCGGGTCTATACCCGACTCATGAATCCTCTATGGATGAAT
TGTCGCAGGACTCCAGTGTACACTGTATGCCCAGCGAGGTGGCAAGCTTT
CTAGACCAT
BO20573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Awh-RC | 864 | CG1072-PC | 1..825 | 17..841 | 4125 | 100 | Plus |
| Awh-RB | 828 | CG1072-PB | 1..825 | 17..841 | 4125 | 100 | Plus |
| Awh-RD | 816 | CG1072-PD | 1..813 | 17..841 | 3910 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Awh-RC | 2104 | CG1072-RC | 537..1361 | 17..841 | 4125 | 100 | Plus |
| Awh-RB | 2104 | CG1072-RB | 537..1361 | 17..841 | 4125 | 100 | Plus |
| Awh-RD | 2092 | CG1072-RD | 537..1349 | 17..841 | 3910 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3860189..3860423 | 422..656 | 1175 | 100 | Plus |
| 3L | 28110227 | 3L | 3859163..3859384 | 201..422 | 1095 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3857940..3858123 | 21..204 | 920 | 100 | Plus |
| 3L | 28110227 | 3L | 3860636..3860761 | 657..782 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 3860890..3860949 | 782..841 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 640..734 | 86..176 | 132 | 63.2 | Plus |
BO20573.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:16 Download gff for
BO20573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 532..1356 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:03 Download gff for
BO20573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 537..1361 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:53 Download gff for
BO20573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Awh-RB | 537..1361 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:53 Download gff for
BO20573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3859167..3859384 | 205..422 | 100 | -> | Plus |
| 3L | 3860190..3860423 | 423..656 | 100 | -> | Plus |
| 3L | 3860636..3860761 | 657..782 | 100 | -> | Plus |
| 3L | 3860891..3860949 | 783..843 | 96 | | Plus |
| 3L | 3857936..3858123 | 17..204 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:03 Download gff for
BO20573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3860891..3860949 | 783..843 | 96 | | Plus |
| arm_3L | 3857936..3858123 | 17..204 | 98 | -> | Plus |
| arm_3L | 3859167..3859384 | 205..422 | 100 | -> | Plus |
| arm_3L | 3860190..3860423 | 423..656 | 100 | -> | Plus |
| arm_3L | 3860636..3860761 | 657..782 | 100 | -> | Plus |
BO20573.pep Sequence
Translation from 16 to 859
> BO20573.pep
MKTELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFI
RERQVYCKADYSKNFGAKCSKCCRGISASDWVRRARELVFHLACFACDQC
GRQLSTGEQFALMDDRVLCKAHYLETVEGGTTSSDEGCDGDGYHKSKTKR
VRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSR
ARQKKHIHAGKNKIREPEGSSFARHINLQLTYSFQNNAQNPMHLNGSKAG
LYPTHESSMDELSQDSSVHCMPSEVASFLDH
BO20573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Awh-PB | 275 | CG1072-PB | 1..275 | 1..275 | 1499 | 100 | Plus |
| Awh-PC | 287 | CG1072-PC | 1..275 | 1..275 | 1499 | 100 | Plus |
| Awh-PD | 271 | CG1072-PD | 1..271 | 1..275 | 1461 | 98.2 | Plus |
| Awh-PA | 214 | CG1072-PA | 1..213 | 1..213 | 1171 | 100 | Plus |
| Lim3-PE | 405 | CG10699-PE | 7..198 | 8..205 | 404 | 43.2 | Plus |
