BO20605.complete Sequence
4966 bp assembled on 2010-10-20
GenBank Submission: KX797016
> BO20605.complete
GAAGTTATCAGTCGACATGGAGGAAAAGCGCATCGCCGACTACTTTGTGG
TGGCCGGAATGCCGGAGAATCCGCAGCTGCTGCAGGAGAACAGCTTCAAT
GACTCGGGAAGATTGAGAGCGGCCACCACCATCGAACCGATCACGGACAT
CGGCGTCTATTTCCCGCTGCTGGGCGAGGAGGTGCCCGAGGGATACGAGA
TCCTCTCGCACACGCCCACGGGTCTACAGGCGAACCTCAATCACGGATCG
GTCCGCACCACCGACTGCTACATCTACTTCCGGCGTGGCAAGGATCGCCC
GCCGCTGGTGGACATAGGAGTCCTGTACGATGGCCACGAGCGGATCATGT
CGGATGCGGAAATCGTTGCGGAGACGCCTGGCGGCAGGGTGGCCAATGTG
AACAACTCGTCCGCGAAGACGTTCCTCACGTACCGACGCGCCCGAGCGGA
CATGCCCTGCAACGAGCTGGTGGTCACCGAACTGTGCGTCATTGTCCAGA
GCAAGGGTGAGCGGGCTCCGCACGCCTTTTGCCTAATCTACAAGACCCTG
AACAAGGGCTATGTTGGCAGCGACGTCTACCTGTGCTACAAGAAGTCCAT
GTACCGGCCTAAGCACATCAGCTACAAGCCGGAGATCCTGCTGCGCTACC
CCACCTTCGACCACACCGACTTCCCGCTGAATCTGTGCCCGAGCGTGCCG
CTCTTCTGCCTGCCAATGGGCGCCTCCCTGGAGGCCTGGCCACACGTCAA
CGGCACGGAGAAGCGGAAACCCATCAGTCCGGTGTTCAGCACTTTTGTGC
TCACCGTGAGCGATGGCACCTACAAGGTTTACGGATCGGCGTTAACTTTC
TACGAGGATTACGATGAGTCAAAGTTGTCGGCTGAGCAGAAGGAGCTGCT
CGGTTGGGACGAGGAGTTCGGCGCCCAGCACTCGCTGCACATGATCAAGG
CTATATGTCTGCTGTCGCATCATCCCTTTGGCGACACCTTCGACAAATGG
CTGAAGTACCTTCATCGAATGGTTCTGTATGACGTTAATATACCCATTCC
CGTGGAGCGCTACATCACCCAGCTGCTGGACGAAGTACCGTTTCCGGCGC
CCAGCATTCACCTGCAGCTGTCCAGCGAGTCCAACGATCGCATACTGCTC
ACACAGCCGGAAGATTCCCCGCTGCCGCGAAGTGGCGCCGGTTTCCACAT
ACTGCTCCAGAACCTGGGCACCGACAACTGTCTGCATGTGCTGCTGCTGG
CCCTCACCGAACAGAAGATACTCATCCACTCACTCAGACCTGCCACGTTG
ACTGCTGTGGCCGAAGCCATTGTCTCCCTGCTGTTTCCGTTCAAGTGGCA
GTGTCCGTACATCCCACTTTGTCCGCTGGGCTTGGCGGAGGTGCTCCATG
CCCCATTGCCTTATCTCATTGGCGTGGACTCGCGCTTCTTCGATTTGTAC
GAGCCGCCCACGGATGTCACCTGCATCGATTTGGACACCAACAACATTAG
CCTATGTGAGTCGCAGCGTCACTTGTCACCCAAGCTGCTGCCGAAACGGG
CAGCCCGCCTACTTCGCCAGACGCTCACCGAACTGGAGAATGCCAAGCCC
ATTAGCTATGACTCCACAAACAGTTTGGATCGCGATATTCGAAAGCGGAA
ACGAGAACTGGTGCTGGAGCAGCGCATCCAGGAGGCCTTTCTGCTCTTCA
TGGCCAGCATTCTGCGCGGCTACAGAGACTTTCTGGTGCCCATATCCAAG
GCACCATCGGTGGGAGCCACCGATCCAAGTGCCCTCTTCCAGCTGAAGGC
TTTTTTGCGATCGCGTGATAAGTCGCACCAGAAGTTCTTCGAGCTGATGA
TGAAGACCCAGATGTTCATCCGTTTCATTGAGGAGCGTTCCTTTGTCTCC
GATGGCGATCATGGTCTCAGCTTCTTCGACGAGTGTGCGGAGAAGGTGGG
CAACTACGATGAAACGCCCGCCCAGCTGCATTTGGTGGACTGGGACACGG
GGCAGAACAGCGAGCGCACCAAGTACATCTTTCCGCCGGACAGCGTAACT
CCGGCGGGATCTCAGCCTGGCGGCGGAGGAGGAGGATTAGCCTACAACTA
CGAGAACTTTACGCTGCAACCGGAACTGTTGCAGAGCACGAAGAAGACGG
CTTTATCGAAATTTCTGCAGCTGCAGCTGAACGCTTCCCTCTCGCCAGGA
TCACCCATTGCCCGGCGAACCAAACACGAGATTAAGCTGTCCCAGAAGAT
GGCCAGCCGTTGTCAGCAGCATCCGGAGGCGTGGTCCAAATACTTGTTGG
CCACCTGTTACTCGCTGTACTTCCTCATCCTGCCATCCATGGTCTTGGAT
CCGCGGCACGCCGGCAAGGAGCCAGAGATACTGCGCGCCGCCTACGATGT
CCTCGTGCGAGCCAGTCGTCTAAAGATCACCTGTGACGAGTTCTGCTACA
GGATCATGATGCAGCTATGCGGTATTCACAATCTGCCTGTGCTGGCCGTC
CGTCTGCACTACCTGATGAAACGCTCTGGCGTGCAGGCCAATGCGCTCAC
CTATGGCTTCTACAACCGCTGCGTCCTTGAGTCGCAGTGGCCCCAGGACA
GTACCACGATCAGCCAGATCCGCTGGAATCGCATTAAGAACGTGGTGTTG
GGAGCGGCGCAGTTCCGCAAGGCTGGCAAACAAAGGGCCGCCTCCAAGGT
GAACAAGTCGCTCAGTGCGTCCCAGGACCAGAACCTCAGCACCCTGGAAA
CGGTGGACGGACAGTCGCGCACCAGTTTGGCTTCCTCCTCCGGCGATGGC
GGTGGCCATGGACTGCTCGATTTTGCCGCCTTCGATCGGCTCAGGAACAA
GTTGGGCAGCATTGTGCGGCAGACGGTGACGGGCGGCAATAACGAGACAA
TGGGCGATGCGGTCAACAACACTGGGTTGCTCATACCCGGCGAACTCAGC
GCCCCGAATACGCCGACCTATGGCGGTGACACCGAAATCCTGGCCAAGGC
ACTTCAGCAACAGCAGCCACGCAAACAGATCATGAGCATTGGCGGCGGCG
ATGACGATGATGAGGATGAGGACGAAGATGAATACACGGCCGGATCGCCG
AGCACGCCGCAAAAGCAACTGGAAGCGGGCGCCGATGACCTGGAATACGC
CGGTGGAGGAGACTACGAGGCGGACGAGGAGGACGAAGATGAAGTCGACG
AGCATGTGGCCGCACAGCGGGCACGTCAGCGAGTGCAGAGTCCAACCAAA
ATCTCGCCACGCACGCCCGTGACCCAAAACGATCCACTGGGTGCTCTCAA
CGAGGAGGAGTCCGCCGCCAGTGCCACGCCCACGCAGGAGACGCAGCAGG
AGCAGCAGCACTCACAGTCGCAGATCGACAGCAGCATATACAGCGACAAG
CCGATCCTGTTCCGGGGCCAGAGGAGCGCCACTTTCGACGAGTCGACGCA
GATCGGGAAGAGTATGCACCGTTCGGAAACGATGCCGGTGGCCAGCAGCG
GTGTGACCAACAGCCTGGCCAACATCGGATCCTCGCTGAAGTTCACGTTC
GGTCCCAGCTTGACGGGCAAGAAGTCGAACGAGTTGATCCAGGGCAGTCT
GAGCAGCATCAAATCGGCGGCCAATTCGCTGACCAAAAAGTTCGACGAGA
TCAAAGGCGTGATATCGGCCAATTCAACGCCGACGAAAACGAACAATGGA
CACCATCCGCATGGCCTGCATCATGGTCACCATCATCCGCACCACCACCA
TCATCATCATTCGCAGCACGGCAATGCGGAGCAGGAGGAGCACGATGCCG
CCGTCCACGAGGAGGGCAAGCTGCGTCGCGTCTCAAGCGACCTGGATCCA
TGGGGCAGGCTCAGCGAGTCGCGTAAATCCAGCTACAATAACCTCGTGCC
GCTCGGCGAGAACAGCTCCACCGGCGCCCTTCACATGCACGCCTTTCCCG
CTGTGCCCGACAACCTCTATAGTCTAACAAGCGAGAACGCCGCGGATCGT
GACTGCGATGTGCTGATCCAGCTGACGACCTGCTCGCAGTGCCACAATTG
CTCGGTGCTCGTCTACGACGAGGAGATCATGAGCGGCTGGACGGCGGAGG
ACTCTAACCTGAACACCACCTGCCATGCCTGCAACAAGCTCACGGTGCCT
TTCCTCAGCGTACAGATCGAACGGCAGGTGGAGGAGTCGGAACAGTCGGA
TCCGCTGCAGGACGGCAAGGAGCAAATAGCCAACGGCAATAGCCACAAGA
CCAGCCTGACCGTGCCGTATCTAAATCCGCTGGTGCTGCGCAAGGAGCTG
GAGAACATACTCACGCAGGAGGGCGACATTGCGCTGATAAAACCGGAATT
TGTCGATGAGCACCCGATCATCTATTGGAACTTGCTCTGGCTGATGGAGC
GCATCGAGAGCAAGACGCACCTGCCCGAGCTCTGTCTGCCCGTGCCGAGC
GACAAGGAGCACATCGATCCGCTGAGCAAGGTGAAGACGGTGCACATCCA
GTGCCTGTGGGACAATCTGAGCCTGCATACGGAGGCCAGTGGTCCACCCA
TGTACTTGCTGTACAGGGAGACCCAGCCGACGAGTCCGCTCATCAAGGCG
CTGCTCACCGATCAGGCGCAGCTCAACAAGAATGTCATTCAGCAAATCAT
TTCGGCCATCCGGTGCAATGACTTCGCCACTCCTCTCAAGCGCTTGGCCA
ATGAGCGACACAAGCTGAAGAGCAACGGCGTGGAGCGATCGCACTCGTTC
TATCGCGACATACTCTTCCTGGCCCTGACCGCCATCGGTAGGTCCAACGT
GGACCTGGCCACATTCCATCGCGAGTATGCAGCCGTGTTCGACAAGCTGA
CGGAGCGGGAGTGCAACATGTACTATCGCAATCAGGATCTGCCGCCCTCG
GCATCGACGATCTTCTGTCGTGCTTACTTCCGCCCGCTTCTGCTGCCCGC
AAGCTTTCTAGACCAT
BO20605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crag-RB | 4935 | CG12737-PB | 1..4932 | 17..4948 | 24660 | 100 | Plus |
| Crag-RD | 5016 | CG12737-PD | 1..3536 | 17..3552 | 17680 | 100 | Plus |
| Crag-RA | 5016 | CG12737-PA | 1..3536 | 17..3552 | 17680 | 100 | Plus |
| Crag-RD | 5016 | CG12737-PD | 3617..5013 | 3552..4948 | 6985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crag-RB | 6115 | CG12737-RB | 577..5509 | 16..4948 | 24665 | 100 | Plus |
| Crag-RD | 7001 | CG12737-RD | 577..4113 | 16..3552 | 17685 | 100 | Plus |
| Crag-RA | 6196 | CG12737-RA | 577..4113 | 16..3552 | 17685 | 100 | Plus |
| Crag-RD | 7001 | CG12737-RD | 4194..5590 | 3552..4948 | 6985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8595926..8597354 | 1821..3249 | 7145 | 100 | Plus |
| X | 23542271 | X | 8594091..8594639 | 316..864 | 2745 | 100 | Plus |
| X | 23542271 | X | 8599526..8599989 | 3984..4447 | 2320 | 100 | Plus |
| X | 23542271 | X | 8599030..8599463 | 3552..3985 | 2170 | 100 | Plus |
| X | 23542271 | X | 8595538..8595858 | 1502..1822 | 1605 | 100 | Plus |
| X | 23542271 | X | 8600310..8600625 | 4633..4948 | 1580 | 100 | Plus |
| X | 23542271 | X | 8593495..8593797 | 16..318 | 1515 | 100 | Plus |
| X | 23542271 | X | 8597412..8597714 | 3250..3552 | 1515 | 100 | Plus |
| X | 23542271 | X | 8594911..8595182 | 1016..1287 | 1360 | 100 | Plus |
| X | 23542271 | X | 8595245..8595461 | 1285..1501 | 1085 | 100 | Plus |
| X | 23542271 | X | 8600061..8600246 | 4447..4632 | 930 | 100 | Plus |
| X | 23542271 | X | 8594698..8594848 | 865..1015 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:20:10 has no hits.
BO20605.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:25 Download gff for
BO20605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crag-RB | 556..5487 | 17..4950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:52 Download gff for
BO20605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crag-RB | 578..5509 | 17..4950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:13 Download gff for
BO20605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crag-RB | 578..5509 | 17..4950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:13 Download gff for
BO20605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8595538..8595858 | 1502..1822 | 100 | -> | Plus |
| X | 8593496..8593796 | 17..317 | 100 | -> | Plus |
| X | 8594093..8594639 | 318..864 | 100 | -> | Plus |
| X | 8594698..8594848 | 865..1015 | 100 | -> | Plus |
| X | 8594911..8595182 | 1016..1287 | 100 | -> | Plus |
| X | 8595248..8595461 | 1288..1501 | 100 | -> | Plus |
| X | 8595928..8597354 | 1823..3249 | 100 | -> | Plus |
| X | 8597412..8597714 | 3250..3552 | 100 | -> | Plus |
| X | 8599031..8599463 | 3553..3985 | 100 | -> | Plus |
| X | 8599528..8599989 | 3986..4447 | 100 | -> | Plus |
| X | 8600062..8600246 | 4448..4632 | 100 | -> | Plus |
| X | 8600310..8600625 | 4633..4950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:52 Download gff for
BO20605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8487529..8487829 | 17..317 | 100 | -> | Plus |
| arm_X | 8488126..8488672 | 318..864 | 100 | -> | Plus |
| arm_X | 8488731..8488881 | 865..1015 | 100 | -> | Plus |
| arm_X | 8488944..8489215 | 1016..1287 | 100 | -> | Plus |
| arm_X | 8489281..8489494 | 1288..1501 | 100 | -> | Plus |
| arm_X | 8489571..8489891 | 1502..1822 | 100 | -> | Plus |
| arm_X | 8489961..8491387 | 1823..3249 | 100 | -> | Plus |
| arm_X | 8491445..8491747 | 3250..3552 | 100 | -> | Plus |
| arm_X | 8493064..8493496 | 3553..3985 | 100 | -> | Plus |
| arm_X | 8493561..8494022 | 3986..4447 | 100 | -> | Plus |
| arm_X | 8494095..8494279 | 4448..4632 | 100 | -> | Plus |
| arm_X | 8494343..8494658 | 4633..4950 | 99 | | Plus |
BO20605.pep Sequence
Translation from 16 to 4966
> BO20605.pep
MEEKRIADYFVVAGMPENPQLLQENSFNDSGRLRAATTIEPITDIGVYFP
LLGEEVPEGYEILSHTPTGLQANLNHGSVRTTDCYIYFRRGKDRPPLVDI
GVLYDGHERIMSDAEIVAETPGGRVANVNNSSAKTFLTYRRARADMPCNE
LVVTELCVIVQSKGERAPHAFCLIYKTLNKGYVGSDVYLCYKKSMYRPKH
ISYKPEILLRYPTFDHTDFPLNLCPSVPLFCLPMGASLEAWPHVNGTEKR
KPISPVFSTFVLTVSDGTYKVYGSALTFYEDYDESKLSAEQKELLGWDEE
FGAQHSLHMIKAICLLSHHPFGDTFDKWLKYLHRMVLYDVNIPIPVERYI
TQLLDEVPFPAPSIHLQLSSESNDRILLTQPEDSPLPRSGAGFHILLQNL
GTDNCLHVLLLALTEQKILIHSLRPATLTAVAEAIVSLLFPFKWQCPYIP
LCPLGLAEVLHAPLPYLIGVDSRFFDLYEPPTDVTCIDLDTNNISLCESQ
RHLSPKLLPKRAARLLRQTLTELENAKPISYDSTNSLDRDIRKRKRELVL
EQRIQEAFLLFMASILRGYRDFLVPISKAPSVGATDPSALFQLKAFLRSR
DKSHQKFFELMMKTQMFIRFIEERSFVSDGDHGLSFFDECAEKVGNYDET
PAQLHLVDWDTGQNSERTKYIFPPDSVTPAGSQPGGGGGGLAYNYENFTL
QPELLQSTKKTALSKFLQLQLNASLSPGSPIARRTKHEIKLSQKMASRCQ
QHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEPEILRAAYDVLVRAS
RLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYLMKRSGVQANALTYGFYN
RCVLESQWPQDSTTISQIRWNRIKNVVLGAAQFRKAGKQRAASKVNKSLS
ASQDQNLSTLETVDGQSRTSLASSSGDGGGHGLLDFAAFDRLRNKLGSIV
RQTVTGGNNETMGDAVNNTGLLIPGELSAPNTPTYGGDTEILAKALQQQQ
PRKQIMSIGGGDDDDEDEDEDEYTAGSPSTPQKQLEAGADDLEYAGGGDY
EADEEDEDEVDEHVAAQRARQRVQSPTKISPRTPVTQNDPLGALNEEESA
ASATPTQETQQEQQHSQSQIDSSIYSDKPILFRGQRSATFDESTQIGKSM
HRSETMPVASSGVTNSLANIGSSLKFTFGPSLTGKKSNELIQGSLSSIKS
AANSLTKKFDEIKGVISANSTPTKTNNGHHPHGLHHGHHHPHHHHHHHSQ
HGNAEQEEHDAAVHEEGKLRRVSSDLDPWGRLSESRKSSYNNLVPLGENS
STGALHMHAFPAVPDNLYSLTSENAADRDCDVLIQLTTCSQCHNCSVLVY
DEEIMSGWTAEDSNLNTTCHACNKLTVPFLSVQIERQVEESEQSDPLQDG
KEQIANGNSHKTSLTVPYLNPLVLRKELENILTQEGDIALIKPEFVDEHP
IIYWNLLWLMERIESKTHLPELCLPVPSDKEHIDPLSKVKTVHIQCLWDN
LSLHTEASGPPMYLLYRETQPTSPLIKALLTDQAQLNKNVIQQIISAIRC
NDFATPLKRLANERHKLKSNGVERSHSFYRDILFLALTAIGRSNVDLATF
HREYAAVFDKLTERECNMYYRNQDLPPSASTIFCRAYFRPLLLPASFLDH
BO20605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crag-PB | 1644 | CG12737-PB | 1..1644 | 1..1644 | 8631 | 100 | Plus |
| Crag-PD | 1671 | CG12737-PD | 1..1671 | 1..1644 | 8593 | 98.4 | Plus |
| Crag-PA | 1671 | CG12737-PA | 1..1671 | 1..1644 | 8593 | 98.4 | Plus |
| Sbf-PB | 1973 | CG6939-PB | 32..452 | 206..624 | 323 | 27.3 | Plus |
| Sbf-PA | 1993 | CG6939-PA | 32..452 | 206..624 | 323 | 27.3 | Plus |
