BO20606.complete Sequence
1489 bp assembled on 2010-10-20
GenBank Submission: KX798715
> BO20606.complete
GAAGTTATCAGTCGACATGGTGTTCCAAATAATAATCCTGGTGATCTGCA
CCATCTGCATGAAGCACTACGCCAAAGGGGAGTTTCAACAAAGTCTGGCC
ATAACCGACATCCTGCCCGAGGACATCAAGCGTTACGACAAGATGAGACC
GCCGAAGAAAGAGGGTCAGCCGACGATAGTCTACTTCCATGTGACGGTGA
TGGGTCTGGACTCCATTGATGAGAACTCGATGACTTATGTGGCGGATGTG
TTCTTTGCACAGACGTGGAAGGATCATCGCCTGCGATTGCCGGAGAATAT
GACACAGGAATACCGCCTGCTCGAGGTGGACTGGCTAAAAAATATGTGGC
GGCCGGATTCGTTTTTCAAAAACGCCAAATCGGTGACCTTTCAGACCATG
ACAATACCCAATCACTATATGTGGCTGTACAAGGATAAGACCATTCTGTA
CATGGTCAAACTAACACTGAAGCTGTCCTGCATCATGAACTTCGCCATTT
ATCCTCATGATACACAGGAGTGCAAGCTGCAAATGGAAAGCCTGTCCCAC
ACCACGGATGACTTGATATTCCAGTGGGATCCAACAACGCCCCTTGTGGT
TGATGAAAACATCGAACTGCCGCAGGTGGCCCTCATCCGAAATGAAACGG
CGGACTGTACCCAAGTTTATTCCACTGGCAACTTCACATGCCTGGAGGTG
GTGTTCACCCTTAAGCGTCGTTTGGTTTACTACGTTTTCAACACCTACAT
TCCCACCTGCATGATAGTGATCATGTCATGGGTATCCTTCTGGATCAAAC
CGGAGGCGGCACCAGCCCGTGTGACTCTGGGTGTCACCTCCTTGCTAACG
CTTTCCACGCAACACGCCAAATCGCAGTCGTCTTTGCCACCTGTTTCCTA
TCTCAAGGCAGTGGACGCCTTTATGTCCGTTTGCACGGTGTTCGTGTTTA
TGGCCCTCATGGAGTATTGTCTAATAAACATCGTCCTGAGCGACACGCCC
ATTCCCAAGCCGATGGCCTATCCACCCAAACCTGTGGCGGGAGATGGGCC
CAAGAAAGAGGGCGAGGGTGCTCCTCCTGGGGGCAGCAACTCGACGGCCA
GCAAGCAACAAGCCACCATGTTGCCACTGGCCGATGAAAAGATCGAGAAA
ATTGAGAAGATCTTTGACGAGATGACCAAGAATAGAAGGATTGTAACCAC
CACACGCCGCGTGGTGCGTCCGCCATTGGACGCCGATGGTCCGTGGATTC
CGCGACAGGAGTCGCGGATAATACTGACCCCGACTATCGCTCCGCCGCCA
CCGCCCCCTCAGCCAGCGGCACCGGAACCGGAACTGCCCAAGCCGAAACT
CACACCCGCCCAGGAGCGGCTCAAGCGGGCTATATATATAGATCGGTCCT
CGCGCGTCCTTTTCCCCGCCCTCTTCGCCAGTCTGAATGGCATCTACTGG
TGTGTGTTCTACGAGTATCTAGCAAGCTTTCTAGACCAT
BO20606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ort-RA | 1458 | CG7411-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
| HisCl1-RD | 1251 | CG14723-PD | 232..495 | 167..430 | 285 | 73.9 | Plus |
| HisCl1-RC | 702 | CG14723-PC | 232..495 | 167..430 | 285 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ort-RA | 2158 | CG7411-RA | 349..1803 | 17..1471 | 7275 | 100 | Plus |
| HisCl1-RD | 1693 | CG14723-RD | 548..811 | 167..430 | 285 | 73.9 | Plus |
| HisCl1-RC | 1707 | CG14723-RC | 430..693 | 167..430 | 285 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19662286..19662932 | 543..1189 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 19661721..19662175 | 88..542 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 19663035..19663317 | 1189..1471 | 1415 | 100 | Plus |
| 3R | 32079331 | 3R | 19661592..19661662 | 17..87 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 11788021..11788219 | 232..430 | 185 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:19:15 has no hits.
BO20606.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:23 Download gff for
BO20606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 349..1803 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:44 Download gff for
BO20606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 349..1803 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:55 Download gff for
BO20606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ort-RA | 349..1803 | 17..1473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:55 Download gff for
BO20606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19661592..19661662 | 17..87 | 100 | -> | Plus |
| 3R | 19661721..19662175 | 88..542 | 100 | -> | Plus |
| 3R | 19662286..19662932 | 543..1189 | 100 | -> | Plus |
| 3R | 19663036..19663317 | 1190..1473 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:44 Download gff for
BO20606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15487314..15487384 | 17..87 | 100 | -> | Plus |
| arm_3R | 15487443..15487897 | 88..542 | 100 | -> | Plus |
| arm_3R | 15488008..15488654 | 543..1189 | 100 | -> | Plus |
| arm_3R | 15488758..15489039 | 1190..1473 | 99 | | Plus |
BO20606.pep Sequence
Translation from 16 to 1489
> BO20606.pep
MVFQIIILVICTICMKHYAKGEFQQSLAITDILPEDIKRYDKMRPPKKEG
QPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWKDHRLRLPENMTQEYR
LLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLT
LKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQWDPTTPLVVDENIE
LPQVALIRNETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMI
VIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVD
AFMSVCTVFVFMALMEYCLINIVLSDTPIPKPMAYPPKPVAGDGPKKEGE
GAPPGGSNSTASKQQATMLPLADEKIEKIEKIFDEMTKNRRIVTTTRRVV
RPPLDADGPWIPRQESRIILTPTIAPPPPPPQPAAPEPELPKPKLTPAQE
RLKRAIYIDRSSRVLFPALFASLNGIYWCVFYEYLASFLDH
BO20606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ort-PA | 485 | CG7411-PA | 1..485 | 1..485 | 2573 | 100 | Plus |
| HisCl1-PB | 422 | CG14723-PB | 50..348 | 23..321 | 1107 | 65.9 | Plus |
| HisCl1-PA | 426 | CG14723-PA | 50..348 | 23..321 | 1107 | 65.9 | Plus |
| HisCl1-PD | 416 | CG14723-PD | 50..342 | 23..321 | 1060 | 64.2 | Plus |
| GluClalpha-PP | 456 | CG7535-PP | 16..448 | 10..481 | 593 | 31.4 | Plus |
