BO20609.complete Sequence
568 bp assembled on 2009-05-13
GenBank Submission: KX799767
> BO20609.complete
GAAGTTATCAGTCGACATGGCGCAGAATATCAGCCCCGAGCAAAGTGGTG
GAGCAGGCGGCGGCGGCAGCAAGCACAGCGATGACTCCATGCCCGTGAAA
GACAATCACGCCGTGAGCAAAAGACTGCACAAGGAACTGATGAACCTGAT
GATGGCCAACGAGAGGGGCATCTCAGCGTTTCCGGACGGCGAGAACATCT
TCAAGTGGGTGGGCACCATAGCGGGTCCACGGAACACGGTGTATTCGGGG
CAAACGTATCGTTTGTCACTGGATTTTCCCAATTCCTATCCGTATGCAGC
ACCCGTGGTGAAGTTCCTGACGTCCTGCTTCCATCCCAATGTTGATCTGC
AGGGCGCCATCTGTTTGGACATACTGAAGGACAAATGGTCGGCCCTGTAC
GATGTGCGCACCATTCTGCTGTCCATACAATCCCTGCTGGGCGAACCGAA
CAACGAGAGTCCACTGAATGCGCAGGCCGCGATGATGTGGAATGACCAAA
AGGAGTACAAAAAATATCTAGACGCCTTCTACGAGAAGCACAAGGACACC
GCAAGCTTTCTAGACCAT
BO20609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-RA | 537 | CG10682-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-RA | 1464 | CG10682-RA | 254..788 | 16..550 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12504717..12505145 | 122..550 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 12504545..12504652 | 16..123 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:28:31 has no hits.
BO20609.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:58 Download gff for
BO20609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 260..793 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:26 Download gff for
BO20609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 255..788 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:50 Download gff for
BO20609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vih-RA | 255..788 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:50 Download gff for
BO20609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12504546..12504652 | 17..123 | 100 | -> | Plus |
| 3L | 12504719..12505145 | 124..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:26 Download gff for
BO20609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12497646..12497752 | 17..123 | 100 | -> | Plus |
| arm_3L | 12497819..12498245 | 124..552 | 99 | | Plus |
BO20609.pep Sequence
Translation from 16 to 568
> BO20609.pep
MAQNISPEQSGGAGGGGSKHSDDSMPVKDNHAVSKRLHKELMNLMMANER
GISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKF
LTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPL
NAQAAMMWNDQKEYKKYLDAFYEKHKDTASFLDH
BO20609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vih-PA | 178 | CG10682-PA | 1..178 | 1..178 | 949 | 100 | Plus |
| Ubc6-PC | 151 | CG2013-PC | 7..151 | 35..183 | 300 | 40.7 | Plus |
| Ubc6-PA | 151 | CG2013-PA | 7..151 | 35..183 | 300 | 40.7 | Plus |
| ben-PE | 151 | CG18319-PE | 3..129 | 32..158 | 292 | 43.3 | Plus |
| ben-PD | 151 | CG18319-PD | 3..129 | 32..158 | 292 | 43.3 | Plus |
