BO20612.complete Sequence
667 bp assembled on 2009-05-13
GenBank Submission: KX796314
> BO20612.complete
GAAGTTATCAGTCGACATGGGTTGGTCACCGCTGATGATAAGGTATCTGG
CATTCCTCTTCAATTTTCTTTGTGCGGTCCTGGGCATCGCCACTATTGTG
GTCAATGTAATAGCAATCGATCAAATAGCTCCAAAGGACCAACTCATCCT
GGGACTGTACATTGCCGTTGGGTCCATCGTCTTCTTGCTCTCATTTTTTG
GATGCTTTGGTGCCATTAAGGAGAGCATCTGTGTTACCTGGGCGTATGCC
ACCTCGATGCTGGTAATGCTGATCGTCTCAATAGTCATGCTTTTTGTCTT
CCGTATGCATTTCGAAGAAGACTCCATTACCAAGCTGAAACAAGCCTTTG
CCAAGCAGACAAACACTTTCGACGCAATGGCCGAGTACCAGACACAGTAC
CAGTGCTGTGGCATATACAAGTTAAAGGACTATGGAGACGCCTACATAAC
TGTTCCAAGTAGCTGTTATGACCAAAATGATACGCCCTACAGAGACGGTT
GTCTGGCCAAAATGGAGACCCAGTACGAGGAGCTCCTCAAGGGTCCTAAG
ATTGTTGGCTGGATGCTGATGGTCATTGAGATAGGTGCCTTCACTTTCTC
CACAATCATGGGAGTGTCCTTAAGGAACGAACTACGACGCTCTGCGTATG
CAAGCTTTCTAGACCAT
BO20612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Er-RA | 636 | CG12837-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Er-RA | 848 | CG12837-RA | 94..727 | 16..649 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7065681..7065866 | 395..580 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 7065131..7065299 | 76..244 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 7065359..7065512 | 244..397 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 7065922..7065992 | 579..649 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 7064492..7064554 | 16..78 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 1553..1592 | 234..196 | 107 | 77.5 | Minus |
| TART-C | 11124 | TART-C TARTC 11124bp | 797..836 | 234..196 | 107 | 77.5 | Minus |
BO20612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:06 Download gff for
BO20612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 78..710 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:28 Download gff for
BO20612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 95..727 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:46 Download gff for
BO20612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Er-RA | 95..727 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:46 Download gff for
BO20612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7065684..7065866 | 398..580 | 100 | -> | Plus |
| 2R | 7065924..7065992 | 581..651 | 97 | | Plus |
| 2R | 7064493..7064552 | 17..76 | 100 | -> | Plus |
| 2R | 7065132..7065299 | 77..244 | 100 | -> | Plus |
| 2R | 7065360..7065512 | 245..397 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:28 Download gff for
BO20612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2953189..2953371 | 398..580 | 100 | -> | Plus |
| arm_2R | 2953429..2953497 | 581..651 | 97 | | Plus |
| arm_2R | 2951998..2952057 | 17..76 | 100 | -> | Plus |
| arm_2R | 2952637..2952804 | 77..244 | 100 | -> | Plus |
| arm_2R | 2952865..2953017 | 245..397 | 100 | -> | Plus |
BO20612.pep Sequence
Translation from 16 to 667
> BO20612.pep
MGWSPLMIRYLAFLFNFLCAVLGIATIVVNVIAIDQIAPKDQLILGLYIA
VGSIVFLLSFFGCFGAIKESICVTWAYATSMLVMLIVSIVMLFVFRMHFE
EDSITKLKQAFAKQTNTFDAMAEYQTQYQCCGIYKLKDYGDAYITVPSSC
YDQNDTPYRDGCLAKMETQYEELLKGPKIVGWMLMVIEIGAFTFSTIMGV
SLRNELRRSAYASFLDH
BO20612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Er-PA | 211 | CG12837-PA | 1..211 | 1..211 | 1094 | 100 | Plus |
| Tsp42Ee-PB | 228 | CG10106-PB | 7..228 | 7..211 | 266 | 32.9 | Plus |
| Tsp42Ee-PA | 228 | CG10106-PA | 7..228 | 7..211 | 266 | 32.9 | Plus |
| Tsp42Ea-PC | 226 | CG18817-PC | 7..226 | 7..211 | 255 | 29.1 | Plus |
| Tsp42Ea-PB | 226 | CG18817-PB | 7..226 | 7..211 | 255 | 29.1 | Plus |
