BO20615.complete Sequence
673 bp assembled on 2009-05-13
> BO20615.complete
GAAGTTATCAGTCGACATGAGCAGCACTGGTGTTGCAAGTAGCAGCACAA
CAGCCGAAGAGGATTGGCCCACGGCCGTTGAGTTTGTGATTATGACAACG
CCCGCAAGCGAATTGGAAGCCAGCACGGAAACCATTGGTAACAATGGCAC
CACCGAAACGACCGTTGGCGAGGCACCCATCATCGGATCGTCGGAAGGAT
CCACACGATCGATGGAGCCAACCACCGCGAGTCCGCTGATGAGCACAAAC
CCATCGAGCAGCAGCAGTCTGGTTAGCACCATTCCCTTGCCACCGACAGC
GGGACTGCCTGTGCAGGATAATCAGCCAGTGCCGTGCACATGCGGCGTCT
TCCTCTCCTCGCAAATCCCAAATGGCTTGCCGACAAAGCCACTTATCCAC
CAGGAATTGGATCATATGTTTCCCTGCAATGCCATCGGTCGCAAGCAGTG
TCAAACCAAATGCCTAGAGACGATCGTACAACATCTGCCGAATTCCGCAA
ATATAGTATGCTCCGCACTGGGTCACGATTGTCACAAGGAACGGGCCTAT
TTGTTCATCAAGAACTGTCACAATCAATGGGTTAATACCAATCTGCAGGC
GGGCAGGGAGTACTGTTGTCGCTCTGGCGTTCCCTACCGTTGCCCATTGA
TGGGTGCAAGCTTTCTAGACCAT
BO20615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fcp3C-RA | 849 | CG4015-PA | 207..846 | 16..655 | 3200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fcp3C-RA | 963 | CG4015-RA | 287..926 | 16..655 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3173668..3174124 | 472..16 | 2285 | 100 | Minus |
X | 23542271 | X | 3173413..3173596 | 655..472 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:28:14 has no hits.
BO20615.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:57 Download gff for
BO20615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fcp3C-RA | 1319..1957 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:12 Download gff for
BO20615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fcp3C-RA | 288..926 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:01 Download gff for
BO20615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fcp3C-RA | 288..926 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:01 Download gff for
BO20615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3173411..3173595 | 473..657 | 98 | <- | Minus |
X | 3173668..3174123 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:12 Download gff for
BO20615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3067444..3067628 | 473..657 | 98 | <- | Minus |
arm_X | 3067701..3068156 | 17..472 | 100 | | Minus |
BO20615.pep Sequence
Translation from 16 to 673
> BO20615.pep
MSSTGVASSSTTAEEDWPTAVEFVIMTTPASELEASTETIGNNGTTETTV
GEAPIIGSSEGSTRSMEPTTASPLMSTNPSSSSSLVSTIPLPPTAGLPVQ
DNQPVPCTCGVFLSSQIPNGLPTKPLIHQELDHMFPCNAIGRKQCQTKCL
ETIVQHLPNSANIVCSALGHDCHKERAYLFIKNCHNQWVNTNLQAGREYC
CRSGVPYRCPLMGASFLDH
BO20615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fcp3C-PA | 282 | CG4015-PA | 70..282 | 1..213 | 1142 | 100 | Plus |