BO20616.complete Sequence
163 bp assembled on 2009-05-14
GenBank Submission: KX799338
> BO20616.complete
GAAGTTATCAGTCGACATGGTTTGCAAGGGTTGTGGAACAAACTGCCAGT
GCTCGGCCCAAAAGTGCGGGGACAACTGCGCCTGCAACAAGGATTGCCAG
TGCGTTTGCAAGAATGGGCCCAAGGACCAGTGCTGCAGCAACAAAGCAAG
CTTTCTAGACCAT
BO20616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MtnB-RC | 132 | CG4312-PC | 1..129 | 17..145 | 645 | 100 | Plus |
| MtnB-RB | 132 | CG4312-PB | 1..129 | 17..145 | 645 | 100 | Plus |
| MtnB-RA | 132 | CG4312-PA | 1..129 | 17..145 | 645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MtnB-RC | 456 | CG4312-RC | 89..217 | 17..145 | 645 | 100 | Plus |
| MtnB-RB | 448 | CG4312-RB | 217..345 | 17..145 | 645 | 100 | Plus |
| MtnB-RA | 320 | CG4312-RA | 89..217 | 17..145 | 645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20503341..20503448 | 145..38 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 20535108..20535202 | 42..136 | 235 | 83.2 | Plus |
| 3R | 32079331 | 3R | 20360450..20360525 | 62..137 | 200 | 84.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:32:37 has no hits.
BO20616.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-14 12:40:59 Download gff for
BO20616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnB-RA | 70..198 | 17..147 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:32 Download gff for
BO20616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnB-RA | 89..217 | 17..147 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:58 Download gff for
BO20616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnB-RA | 89..217 | 17..147 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:58 Download gff for
BO20616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20503339..20503444 | 42..147 | 98 | <- | Minus |
| 3R | 20503506..20503530 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:32 Download gff for
BO20616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16329061..16329166 | 42..147 | 98 | <- | Minus |
| arm_3R | 16329228..16329252 | 17..41 | 100 | | Minus |
BO20616.pep Sequence
Translation from 16 to 163
> BO20616.pep
MVCKGCGTNCQCSAQKCGDNCACNKDCQCVCKNGPKDQCCSNKASFLDH
BO20616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MtnB-PC | 43 | CG4312-PC | 1..43 | 1..43 | 271 | 100 | Plus |
| MtnB-PB | 43 | CG4312-PB | 1..43 | 1..43 | 271 | 100 | Plus |
| MtnB-PA | 43 | CG4312-PA | 1..43 | 1..43 | 271 | 100 | Plus |
| MtnC-PA | 43 | CG5097-PA | 1..43 | 1..43 | 234 | 81.4 | Plus |
| MtnD-PB | 44 | CG33192-PB | 1..43 | 1..43 | 221 | 79.1 | Plus |
