BO20619.complete Sequence
1363 bp assembled on 2009-05-13
GenBank Submission: KX795902
> BO20619.complete
GAAGTTATCAGTCGACATGTCCGCCCTGCGTCGGGTGCGCAAATACTTTA
TATCCTCTCAGGTCTACGAGGCACTGCGTCCACTATTCTTCCTAACGTTT
CTATACGGACTAACGCCATTTCATGTGGTCAGACGAAAGATGGGGGAATC
CTACTTGAAGATGTCCTGTTTCGGTGTCTTCAACATCTTCATTTACATCT
GCCTCTGCGGATTCTGCTACATTTCATCCCTGAGGCAGGGAGAATCCATT
GTGGGATATTTCTTTCGCACCGAAATCTCCACAATCGGCGATCGTTTGCA
GATCTTTAATGGTTTGATAGCTGGTGCTGTGATTTATACGTCGGCAATCC
TAAAACGCTGCAAGCTTTTGGGCACACTGACCATTCTACACAGCTTGGAT
ACGAACTTCTCGAACATTGGAGTACGTGTGAAATATTCGAGAATATTCCG
GTACTCGCTACTGGTGCTGATCTTCAAGCTACTGATCCTGGGTGTTTATT
TCGTTGGAGTTTTCCGGCTGCTCGTCTCCCTGGATGTCACACCATCGTTC
TGCGTTTGTATGACATTCTTTCTGCAACATTCGGTTGTCTCCATAGCGAT
TTGTTTGTTCTGCGTGATTGCCTTCAGTTTCGAGCGGCGCCTCAGTATCA
TCAATCAGGTGTTGAAGAACCTAGCCCATCAATGGGACACCCGAAGCCTC
AAGGCAGTGAATCAAAAACAGCGCTCTCTACAATGTCTCGATTCATTTTC
CATGTACACCATTGTAACCAAGGATCCTGCGGAGATTATACAGGAGTCCA
TGGAGATACATCATCTCATTTGCGAGGCAGCTGCCACGGCTAACAAATAT
TTTACCTACCAATTGCTGACCATTATATCCATAGCATTTCTGATCATCGT
TTTCGATGCATACTATGTTCTGGAGACGCTACTGGGAAAATCGAAGCGCG
AAAGCAAATTCAAAACTGTGGAATTTGTGACATTTTTCTCGTGTCAAATG
ATTTTGTATCTGATCGCCATAATTTCCATTGTCGAGGGAAGTAATCGAGC
CATCAAAAAGAGCGAGAAAACTGGAGGCATAGTGCACTCCCTACTCAATA
AAACCAAAAGTGCTGAGGTCAAGGAGAAACTGCAGCAATTCTCCATGCAG
TTGATGCATCTGAAAATTAATTTTACTGCAGCTGGTCTGTTCAACATCGA
CCGCACATTGTATTTCACGATCAGCGGGGCCTTGACCACTTATCTCATCA
TCTTGCTGCAGTTCACATCCAATTCCCCGAACAATGGTTATGGGAATGGC
AGCTCTTGCTGTGAGACCTTCAATAATATGACGAATCATACGCTTGCAAG
CTTTCTAGACCAT
BO20619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr28b-RB | 1332 | CG13788-PB | 1..1329 | 17..1345 | 6645 | 100 | Plus |
| Gr28b-RD | 1323 | CG13788-PD | 628..1320 | 653..1345 | 3465 | 100 | Plus |
| Gr28b-RC | 1413 | CG13788-PC | 716..1410 | 651..1345 | 3460 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr28b-RB | 1585 | CG13788-RB | 72..1400 | 17..1345 | 6645 | 100 | Plus |
| Gr28b-RD | 1505 | CG13788-RD | 628..1320 | 653..1345 | 3465 | 100 | Plus |
| Gr28b-RC | 1595 | CG13788-RC | 716..1410 | 651..1345 | 3460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7459927..7460571 | 661..17 | 3225 | 100 | Minus |
| 2L | 23513712 | 2L | 7455201..7455764 | 1219..656 | 2820 | 100 | Minus |
| 2L | 23513712 | 2L | 7455011..7455137 | 1345..1219 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:36:24 has no hits.
BO20619.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:38:54 Download gff for
BO20619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 72..1400 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:35 Download gff for
BO20619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 72..1400 | 17..1347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:57 Download gff for
BO20619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gr28b-RB | 72..1400 | 17..1347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:57 Download gff for
BO20619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7455009..7455136 | 1220..1347 | 98 | <- | Minus |
| 2L | 7455201..7455761 | 659..1219 | 100 | <- | Minus |
| 2L | 7459930..7460571 | 17..658 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:35 Download gff for
BO20619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7455009..7455136 | 1220..1347 | 98 | <- | Minus |
| arm_2L | 7455201..7455761 | 659..1219 | 100 | <- | Minus |
| arm_2L | 7459930..7460571 | 17..658 | 100 | | Minus |
BO20619.pep Sequence
Translation from 16 to 1363
> BO20619.pep
MSALRRVRKYFISSQVYEALRPLFFLTFLYGLTPFHVVRRKMGESYLKMS
CFGVFNIFIYICLCGFCYISSLRQGESIVGYFFRTEISTIGDRLQIFNGL
IAGAVIYTSAILKRCKLLGTLTILHSLDTNFSNIGVRVKYSRIFRYSLLV
LIFKLLILGVYFVGVFRLLVSLDVTPSFCVCMTFFLQHSVVSIAICLFCV
IAFSFERRLSIINQVLKNLAHQWDTRSLKAVNQKQRSLQCLDSFSMYTIV
TKDPAEIIQESMEIHHLICEAAATANKYFTYQLLTIISIAFLIIVFDAYY
VLETLLGKSKRESKFKTVEFVTFFSCQMILYLIAIISIVEGSNRAIKKSE
KTGGIVHSLLNKTKSAEVKEKLQQFSMQLMHLKINFTAAGLFNIDRTLYF
TISGALTTYLIILLQFTSNSPNNGYGNGSSCCETFNNMTNHTLASFLDH
BO20619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gr28b-PB | 443 | CG13788-PB | 1..443 | 1..443 | 2250 | 100 | Plus |
| Gr28b-PC | 470 | CG13788-PC | 30..470 | 5..443 | 1532 | 68.9 | Plus |
| Gr28b-PD | 440 | CG13788-PD | 9..440 | 11..443 | 1397 | 66.3 | Plus |
| Gr28b-PA | 452 | CG13788-PA | 15..452 | 6..443 | 1395 | 64.4 | Plus |
| Gr28b-PE | 447 | CG13788-PE | 18..447 | 16..443 | 1303 | 64.5 | Plus |
